Locus 3666

Sequence ID X_DroMel_CAF1
Location 9,800,127 – 9,800,247
Length 120
Max. P 0.952174
window6009

overview

Window 9

Location 9,800,127 – 9,800,247
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.89
Mean single sequence MFE -46.89
Consensus MFE -41.49
Energy contribution -41.82
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -3.09
Structure conservation index 0.88
SVM decision value 1.42
SVM RNA-class probability 0.952174
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9800127 120 - 22224390
UCCGUCCGGACAUUCGGACACCAGGACACCAGGACACCCGGGCGGGCACUCCCUGUCGUCAGCUGCCAGGCGAACUUAAUGCCUGCUCCGUCUGUCUAAGCUGUCCAGCUUCAGUCCAAC
...((((((....))))))....((((....(((((..((((((((((.......(((((........)))))......))))))).)))..)))))(((((....)))))..))))... ( -50.22)
>DroSec_CAF1 14805 112 - 1
UCCGUCCGGACAUUCGGACACCA--------GGACACCCGGGCGGGCACUCCCUGUCGUCAGCUGCCAGGCGAACUUAAUGCCUGCUCGGUCUGUCUAAGCUGUCCAGCUUCAGUCCAAC
...((((((....))))))....--------((((..(((((((((((.......(((((........)))))......))))))))))).......(((((....)))))..))))... ( -46.52)
>DroSim_CAF1 15933 112 - 1
UCCGUCCGGACAUUCGGACACCA--------GGACACCCGGGCGGGCACUCCCUGUCGUCAGCUGCCAGGCGAACUUAAUGCCUGCUCCGUCUGUCUAAGCUGUCCAGCUUCAGUCCAAC
(((....))).....((((....--------(((((..((((((((((.......(((((........)))))......))))))).)))..)))))(((((....)))))..))))... ( -43.92)
>consensus
UCCGUCCGGACAUUCGGACACCA________GGACACCCGGGCGGGCACUCCCUGUCGUCAGCUGCCAGGCGAACUUAAUGCCUGCUCCGUCUGUCUAAGCUGUCCAGCUUCAGUCCAAC
(((....))).....((((............(((((..((((((((((.......(((((........)))))......))))))).)))..)))))(((((....)))))..))))... (-41.49 = -41.82 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:11 2006