| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,799,401 – 9,799,516 |
| Length | 115 |
| Max. P | 0.601485 |
| Location | 9,799,401 – 9,799,516 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 99.42 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -27.10 |
| Energy contribution | -27.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.42 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9799401 115 - 22224390 CACUUGUCUAACGAUGUAACCAAUAAAAAAUGCAUCGCCCUGGAAAAAAUCAACCUGCCAACCGGACAGGCAAACAUGGAGACACAGAGACAGUUGGUCAGUGGUUGGGAAAAUA ((((.(.(((((((((((............))))))...(((...........((((((....)).))))......((....))))).....))))).)))))............ ( -27.10) >DroSec_CAF1 14077 115 - 1 CACUUGUCUAACGAUGUAACCAAUAAAAUAUGCAUCGCCCUGGAAAAAAUCAACCUGCCAACCGGACAGGCAAACAUGGAGACACAGAGACAGUUGGUCAGUGGUUGGGAAAAUA ((((.(.(((((((((((............))))))...(((...........((((((....)).))))......((....))))).....))))).)))))............ ( -27.10) >DroSim_CAF1 15209 115 - 1 CACUUGUCUAACGAUGUAACCAAUAAAAAAUGCAUCGCCCUGGAAAAAAUCAACCUGCCAACCGGACAGGCAAACAUGGAGACACAGAGACAGUUGGUCAGUGGUUGGGAAAAUA ((((.(.(((((((((((............))))))...(((...........((((((....)).))))......((....))))).....))))).)))))............ ( -27.10) >consensus CACUUGUCUAACGAUGUAACCAAUAAAAAAUGCAUCGCCCUGGAAAAAAUCAACCUGCCAACCGGACAGGCAAACAUGGAGACACAGAGACAGUUGGUCAGUGGUUGGGAAAAUA ((((.(.(((((((((((............))))))...(((...........((((((....)).))))......((....))))).....))))).)))))............ (-27.10 = -27.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:10 2006