Locus 3643

Sequence ID X_DroMel_CAF1
Location 9,763,900 – 9,763,994
Length 94
Max. P 0.882699
window5956

overview

Window 6

Location 9,763,900 – 9,763,994
Length 94
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 78.04
Mean single sequence MFE -24.42
Consensus MFE -6.28
Energy contribution -7.82
Covariance contribution 1.54
Combinations/Pair 1.07
Mean z-score -2.17
Structure conservation index 0.26
SVM decision value 0.92
SVM RNA-class probability 0.882699
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9763900 94 - 22224390
-----CGGCCACCCCUUUAUGG-GGCCGGGGCCAAUCUUAUGGGCCUCGUCCAGGCGCCAAAAUGUGGCAAAUUAAAUGCCAAAACAUCAAAAGGCAAAC-
-----..(((.((((.....))-)).(((((((.........)))))))....)))((((.....))))........((((............))))...- ( -34.50)
>DroSec_CAF1 57353 95 - 1
-----CGACCACCCCUUUAUGGGGGCCGGGGCCAAUCUUAUG-GCCUCGUCCAGGCGCCAAAAUGUGACAUAUUAAAUGCCAAAACAUCAAAAGGCAAACA
-----......((((.....))))((((((((((......))-))))).....((((....(((((...)))))...))))............)))..... ( -30.50)
>DroEre_CAF1 59003 92 - 1
-----CGGCCACCCCUCAUUGG-G-CCGGGGCCAAUCUUAUG-GCCUCAACCAGGCGCCAAAAUGUGUCAAAUUAAAUGCUAAAACAUCAAAAGGCCAAC-
-----.((((..(((.....))-)-..(((((((......))-))))).....(((((......)))))........................))))...- ( -30.40)
>DroYak_CAF1 50769 93 - 1
-----CGGCCACCCCUUUUCGG-GACCGGGCUCAAUCUCAUG-UCCUCGUCCAGGCGCCAAAAUGUGACAAAUUAAAUGCCAAAACAUCAAAAGGCAAAC-
-----..(((...........(-(((.((((..........)-)))..)))).((((....(((.......)))...))))............)))....- ( -19.60)
>DroAna_CAF1 38984 80 - 1
GCCUUCGCCCCUUCCCUUAU-----------CCAAUUUG-------CCGUCCAGGCGCCAAAAUGUGACAAAUUAAAUGCCAAAACAUCAAAAGACCC---
...................(-----------(((.((((-------.(((....))).)))).)).))..............................--- (  -7.10)
>consensus
_____CGGCCACCCCUUUAUGG_G_CCGGGGCCAAUCUUAUG_GCCUCGUCCAGGCGCCAAAAUGUGACAAAUUAAAUGCCAAAACAUCAAAAGGCAAAC_
.......(((.................(((((...........))))).....((((....(((.......)))...))))............)))..... ( -6.28 =  -7.82 +   1.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:24 2006