| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,749,895 – 9,749,988 |
| Length | 93 |
| Max. P | 0.594879 |
| Location | 9,749,895 – 9,749,988 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 78.06 |
| Mean single sequence MFE | -21.53 |
| Consensus MFE | -12.53 |
| Energy contribution | -12.20 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9749895 93 - 22224390 UGCCUUUCUCAUUAGGGACUCCU-UUGUUGUGACACUAAAAUAUUGUGUUGCAACCUUUGCU-GGAUUAUCAUUUGCCUUUGCAG-UUGCA--CUUUU (((...((((....)))).....-..((((..((((.........))))..))))..((((.-((...........))...))))-..)))--..... ( -18.50) >DroPse_CAF1 54487 94 - 1 UCCCCUGCUGGUC--GGUCUCCACUUACUGCGACACUAAAAUAUUGUGUUGCAG-CUUUGCC-UGAUUAUCAUUUGCCGCUCCAAAAGGCAGCCUUUU ...(((..(((.(--(((.........(((((((((.........)))))))))-.......-((.....))...))))..)))..)))......... ( -24.10) >DroSec_CAF1 41886 93 - 1 UGCCGUUCUCAUUAGGGAGUCCU-UUUUUGUGACACUAAAUUAUUGUGUGGCAACCUUUGCCGGGAUUAUCAUUUGCCU-UGCAG-UGGCA--CUUUU ((((((((((....)))))....-...((((.((((.........)))).))))...((((.(((...........)))-.))))-)))))--..... ( -21.90) >DroEre_CAF1 38209 94 - 1 NNNNNNNNNNNUCAGGGGAUGCUUUUGUUGUGACACUAAAAUAUUGUGUUGCAACCUUUGCU-GGAUUAUCAUUUGCGUUUGCAG-UUGCA--CUUUU ..............(.((((((...(((((..((((.........))))..)))((......-)).....))...)))))).)..-.....--..... ( -18.50) >DroYak_CAF1 37064 93 - 1 UGCCUUUCUCAUUAGGGACUGCU-UUGUUGUGACACUAAAAUAUUGUGUUGCAACCUUUGCU-GGAUUAUCAUUUGCCUUUGCAG-UUGCA--CUUUU ..............(.((((((.-..((((..((((.........))))..))))....((.-.(.....)....))....))))-)).).--..... ( -22.10) >DroPer_CAF1 58593 94 - 1 UCCCCUGCUGGUC--GGUCUCCAUUUACUGCGACACUAAAAUAUUGUGUUGCAG-CUUUGCC-UGAUUAUCAUUUGCCGCUCCAAAAGGCAGCCUUUU ...(((..(((.(--(((.........(((((((((.........)))))))))-.......-((.....))...))))..)))..)))......... ( -24.10) >consensus UGCCCUUCUCAUCAGGGACUCCU_UUGUUGUGACACUAAAAUAUUGUGUUGCAACCUUUGCC_GGAUUAUCAUUUGCCUUUGCAG_UGGCA__CUUUU ...........................(((((((((.........)))))))))....................((((.........))))....... (-12.53 = -12.20 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:22 2006