Locus 3636

Sequence ID X_DroMel_CAF1
Location 9,717,014 – 9,717,105
Length 91
Max. P 0.640990
window5949

overview

Window 9

Location 9,717,014 – 9,717,105
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 87.66
Mean single sequence MFE -30.53
Consensus MFE -22.98
Energy contribution -23.85
Covariance contribution 0.87
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.75
SVM decision value 0.22
SVM RNA-class probability 0.640990
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9717014 91 - 22224390
GGCCCAGAUAAGAUUUUCCCCCUGGUACCCCUUUGCGCAGAACAGGGUGAUGUACUACCAGCCGGGGAAAUCUAUGGCCCCUCGUACCGAU
((((......((((((((((.((((((.....(..(.(......).)..).....))))))..))))))))))..))))............ ( -29.60)
>DroSec_CAF1 5056 90 - 1
GGCCCAGAUAAGAUUUUCC-CCUGGUACCCCUUCGCGAAGAACAGGGUGAUGUACUACCAGCCGGGGAAAUUUAUGGGCCCCCGUACCGAA
((((((....(((((((((-((((((((((.(((.....)))..))))........)))))..)))))))))).))))))........... ( -33.70)
>DroSim_CAF1 4214 90 - 1
GGCCCAGAUAAGAUUUUCC-CCUGGUACCCCUUCGCGAAGAACAGGGUGAUGUACUGCCAGCCGGGGAAAUCUAUGUGCCCUCGUACCGAA
(((.((....(((((((((-((((((((((.(((.....)))..))))........)))))..)))))))))).)).)))........... ( -29.50)
>DroYak_CAF1 3427 89 - 1
GGCCCAGAUAAGAUUUUCC-CCUGGUAGCCCA-UGCGAGAAACAGGGUGCUGUACUAGCAGUCGGGUAAAUCUAUGGGCGCUUCAACCGAA
.(((((....((((((.((-(((.(((.....-))).)).....((.(((((...))))).))))).)))))).)))))............ ( -29.30)
>consensus
GGCCCAGAUAAGAUUUUCC_CCUGGUACCCCUUCGCGAAGAACAGGGUGAUGUACUACCAGCCGGGGAAAUCUAUGGGCCCUCGUACCGAA
((((((....(((((((((..((((((.....((((..........)))).....))))))...))))))))).))))))........... (-22.98 = -23.85 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:18 2006