Locus 3634

Sequence ID X_DroMel_CAF1
Location 9,709,253 – 9,709,350
Length 97
Max. P 0.997271
window5946

overview

Window 6

Location 9,709,253 – 9,709,350
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 95.67
Mean single sequence MFE -28.24
Consensus MFE -26.54
Energy contribution -26.46
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -1.89
Structure conservation index 0.94
SVM decision value 2.83
SVM RNA-class probability 0.997271
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9709253 97 - 22224390
ACUUUUUGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUCGGCUAUUCUGCUUCUUCUUGGUCCACAGCACGCUGUGCUCUAUUAGAAUCUUCUU
.......((((...))))..((((((....(((.........)))...))))))(((...(((..(((((....)))))..)))..)))........ ( -27.80)
>DroSec_CAF1 50605 97 - 1
ACUUUUAGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUGGGCUAUUCUGCUUCUUCUUGGUCCACAGCAAGCUGUGCUCUAUUAGAAUCUUCUU
.......((((...))))..((((((((((.((........)))))).))))))(((...(((..(((((....)))))..)))..)))........ ( -32.00)
>DroSim_CAF1 25035 97 - 1
ACUUUUAGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUCGGCUAUUCUGCUUCUUCUUGGUCCACAGCAAGCUGUGCUCUAUUAGAAUCUUCUU
.......((((...))))..((((((....(((.........)))...))))))(((...(((..(((((....)))))..)))..)))........ ( -28.00)
>DroEre_CAF1 27642 95 - 1
ACUUUUUGCCCAGUGGGCGUGGCAGAUGGCGCC-UCUCCUUCGACUAUUCUGUUUCUU-UAGGUCCACAGCAAGCUGUGCUCCAUUAGAAUCUUCUU
.......((((...))))...((((((((((..-.......)).))).)))))((((.-..((..(((((....)))))..))...))))....... ( -23.70)
>DroYak_CAF1 27184 97 - 1
ACUUUUUGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUCGGCCAUUCUGCUUCUUCUUGGUCCACAGCAAGCUGUGCUCUAUUAGAAUCUUCUU
.......((((...))))..((((((((((.............)))).))))))(((...(((..(((((....)))))..)))..)))........ ( -29.72)
>consensus
ACUUUUUGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUCGGCUAUUCUGCUUCUUCUUGGUCCACAGCAAGCUGUGCUCUAUUAGAAUCUUCUU
.......((((...))))..((((((((((.............)))).))))))(((...(((..(((((....)))))..)))..)))........ (-26.54 = -26.46 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:15 2006