| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,671,017 – 9,671,123 |
| Length | 106 |
| Max. P | 0.998749 |
| Location | 9,671,017 – 9,671,123 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.43 |
| Mean single sequence MFE | -38.64 |
| Consensus MFE | -19.68 |
| Energy contribution | -18.92 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.51 |
| SVM decision value | 3.21 |
| SVM RNA-class probability | 0.998749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9671017 106 - 22224390 GAUGGAAGAAAGUUGUAGUUGCAUG-------GGUAACUGCGAGAAAUCGGGAGGAAUGGAGCU------GCCAUUUGGCAACAGGUGGUGAGGCUUAGUCU-UUGGGGAUCUGUUCUCC ...(((.(((...(((((((((...-------.)))))))))(((..((.(((((....(((((------((((((((....))))))))..)))))..)))-)).))..))).)))))) ( -39.30) >DroAna_CAF1 34527 117 - 1 --CCGGAGAAAGUUUCGGUCGAGGGCGGGAGCGGGAGCGGGGGGAGUUCGUGAGGGUGGGGGCUGAGUCGUGCAUUAGGCAACAGGUGGAAGGGCUUAGUCC-GCACUGAUCUGCUCAUU --((((((....))))))....(((((((..((.((((.......)))).))..((((.((((((((((.(.(((..(....)..)))..).))))))))))-.))))..)))))))... ( -48.30) >DroSim_CAF1 20153 106 - 1 GAUGGAGGAAAGUUGUAGUUGCAUG-------GGAAACUGCGAGAAAUCGGGAGGAAUGGAGCU------GCCAUUUGGCAACAGGUGGUGAGGCUUAGUCU-UUGGGGAUCUGUUCUCC ...((((((....(((((((.....-------...)))))))(((..((.(((((....(((((------((((((((....))))))))..)))))..)))-)).))..))).)))))) ( -39.10) >DroEre_CAF1 13514 106 - 1 GGUGAAAGAAAGUUGUAGUUGCAUG-------GGAAACUGCGAGAAAUUGGGAGGAAUGGGACU------UGCAUUUGGCAACAGGUGGCGAGGCUUAGUCU-UUGGGGAUCUGUUCUCC ............((((((((.....-------...))))))))........(((((.((((.((------((((((((....))))).))))).)))).)))-))(((((.....))))) ( -31.40) >DroYak_CAF1 17736 107 - 1 GAUGGAAGAAAGUUGUAGUUGCGUG-------GGAAACUGCGAGAAAUCGGGAGGAAUGGGACA------UGCAUUUGGCAACAGGUGGUGAGGCUUAGCCUCUUGGGGAUCUCUUCUCC ...(((.(((............(..-------(....)..)((((..((((((((..((((.((------(.((((((....)))))))))...)))).))))))))...)))))))))) ( -35.10) >consensus GAUGGAAGAAAGUUGUAGUUGCAUG_______GGAAACUGCGAGAAAUCGGGAGGAAUGGGGCU______UGCAUUUGGCAACAGGUGGUGAGGCUUAGUCU_UUGGGGAUCUGUUCUCC ............((((((((...............)))))))).......((((((..((............((((((....))))))...((((...))))........))..)))))) (-19.68 = -18.92 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:48 2006