Locus 3613

Sequence ID X_DroMel_CAF1
Location 9,669,916 – 9,670,008
Length 92
Max. P 0.781892
window5915

overview

Window 5

Location 9,669,916 – 9,670,008
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.53
Mean single sequence MFE -34.54
Consensus MFE -27.48
Energy contribution -28.16
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -1.47
Structure conservation index 0.80
SVM decision value 0.56
SVM RNA-class probability 0.781892
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9669916 92 - 22224390
-----------CUUUCCCGGACUUUUAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCACCACUGAGUGACCGGAUGACCGCAGCAUCAGCAG-----------------A
-----------.................(((((((((......((((((((..(((((..(((........))))))))))))).))).)))))))))....-----------------. ( -28.40)
>DroAna_CAF1 33228 108 - 1
CUCAGCCAACCGUUUCGAGGAGUUAUAAUGAUGUUGCUCCACUGUCUCCGGCUUCACUUGCAGCUGC--CGCUGAGUGACCGGAUGACCGCAACGUCCAAAGC------AUCCACG----
...............((.((((((.....((((((((......((((((((..(((((..((((...--.)))))))))))))).))).))))))))...)))------.))).))---- ( -34.20)
>DroSim_CAF1 19078 91 - 1
-----------CUUUCCCGGACUU-UAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCACCGCUGAGUGACCGGAUGACCGCAGCAUCAGCAG-----------------G
-----------.............-...(((((((((......((((((((..(((((..((((......)))))))))))))).))).)))))))))....-----------------. ( -32.30)
>DroEre_CAF1 12450 107 - 1
-----------CUUUCCCGGACUUUUAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCAACGCUGAGUGACCGGAUGACCGCAGCAUCAGCAGGGCGAAAAUCUAUGG--G
-----------....((((((.((((..(((((((((......((((((((..(((((..((((......)))))))))))))).))).)))))))))((...)))))).)))..))--) ( -37.10)
>DroYak_CAF1 16601 108 - 1
-----------CUUUCCCGGACUUUUAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCACCGCUGAGUGACCGGAUAACCACAGCAGCAGUCGGGCGA-AAUCUAUGGGGG
-----------...(((((..........(((.((((((((((((.(((((..(((((..((((......))))))))))))))...........))))))))))))-.)))..))))). ( -40.70)
>consensus
___________CUUUCCCGGACUUUUAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCACCGCUGAGUGACCGGAUGACCGCAGCAUCAGCAG_______AUC_A_G___G
............................(((((((((......((((((((..(((((..((((......)))))))))))))).))).)))))))))...................... (-27.48 = -28.16 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:47 2006