Locus 3603

Sequence ID X_DroMel_CAF1
Location 9,658,256 – 9,658,361
Length 105
Max. P 0.527336
window5898

overview

Window 8

Location 9,658,256 – 9,658,361
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 84.19
Mean single sequence MFE -23.90
Consensus MFE -17.27
Energy contribution -18.77
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.72
SVM decision value -0.01
SVM RNA-class probability 0.527336
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9658256 105 + 22224390
CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGGUUUUUUCGGGCGACAGGGCCAUCUUCUUCAUUUGCAUUUCGAAACUCAAAUCGAUA
.......(((((.........((((..(((((..(((((((((....)))))))))..)))))..))))..........((((.....)))).......))))). ( -29.80)
>DroSim_CAF1 8383 101 + 1
CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGGUU-UCUCGGGCGACAGGGCCAUCU---UCAUUUGCAUUUUGAAACUCAAAUCGAUA
.......(((((.........((((..(((((..(((.(((((....))))-))))..)))))..))))....---..........((((.....))))))))). ( -29.70)
>DroEre_CAF1 908 83 + 1
CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAA-AGGAAAUCAGAGGG------------------CCAUCU---UCAUUUGCAUUUUGAAACUCAAAUCGAUA
.......(((((((((.....))))....(((((-(.((....(((...------------------...)))---)).)))))).((((.....))))))))). ( -17.30)
>DroYak_CAF1 7312 83 + 1
CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGUGGG-------------------CAUCU---UCAUUUGCAUUUGGAAACUCAAAUCGAUA
.......(((((((((.....))))....((((((((((..((....))-------------------..)))---))..)))))...(....).....))))). ( -18.80)
>consensus
CACAUUAAUCGAGGCUACUUAGGCCAAGUUGCAAGAGGAAAUCAGAGGG__________________CCAUCU___UCAUUUGCAUUUUGAAACUCAAAUCGAUA
.......(((((((((.....))))....(((((...((....(((.((((((.((....)).)))))).)))...))..)))))..............))))). (-17.27 = -18.77 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:31 2006