Locus 360

Sequence ID X_DroMel_CAF1
Location 1,101,145 – 1,101,247
Length 102
Max. P 0.684954
window542

overview

Window 2

Location 1,101,145 – 1,101,247
Length 102
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 86.77
Mean single sequence MFE -16.72
Consensus MFE -12.40
Energy contribution -13.02
Covariance contribution 0.63
Combinations/Pair 1.14
Mean z-score -1.67
Structure conservation index 0.74
SVM decision value 0.31
SVM RNA-class probability 0.684954
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1101145 102 - 22224390
CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCACAACACAAUGAGUGCCUAAU---------UGUACGAUAUUCACGCAUGCAACCGACA
.......(((.......((((.(((((.....((....))........((((((........))))))......---------.....)))))....))))......))). ( -14.32)
>DroSec_CAF1 7108 107 - 1
CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCA----AGAAUGCGUGCCUAAUUGUCCCAAUUGUACGAUAUUCACGCAUACAACCGACA
.......(((........((((((....................))))))....----.(.(((((((....(((((.(.....).)))))...))))))).)....))). ( -16.25)
>DroEre_CAF1 7137 105 - 1
CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCA----AGAAUGCGUGCCUAAUUGUCCCAA--AUACGAUUUUUGCGCAUCUAACCGACA
.......(((........((((((....................))))))....----(((.((((((...((((((.....--..))))))..)))))))))....))). ( -15.85)
>DroYak_CAF1 7169 105 - 1
CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCA----AGAACGCGUGCCUAAUUGUCCCAA--AUACGAUUUCUGCGCGUGUCACCGACA
.......(((........((((((....................))))))....----.((.(((((((..((((((.....--..))))))...)))))))))...))). ( -20.45)
>consensus
CUACCAAGUCUACCAUAAUGUUAUGUCACCACGAUACUUCUCAAAUAACACUCA____AGAAUGCGUGCCUAAUUGUCCCAA__AUACGAUAUUCACGCAUGCAACCGACA
.......(((........((((((....................))))))...........(((((((...((((((.........))))))..)))))))......))). (-12.40 = -13.02 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:33 2006