Locus 3596

Sequence ID X_DroMel_CAF1
Location 9,640,493 – 9,640,594
Length 101
Max. P 0.668875
window5890

overview

Window 0

Location 9,640,493 – 9,640,594
Length 101
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 86.08
Mean single sequence MFE -30.07
Consensus MFE -17.59
Energy contribution -16.93
Covariance contribution -0.66
Combinations/Pair 1.21
Mean z-score -3.26
Structure conservation index 0.59
SVM decision value 0.29
SVM RNA-class probability 0.668875
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9640493 101 - 22224390
-----ACUACAUAGAAAUAUAUACAUAUAUAUGUGUGUGUGUGUUUCGAGAGCUGAAAAGUGGGCGUUAAGUUGGCUAAUGAAAAUUGCCAGGCAACGUUGAAAAG
-----........(((((((((((((((....)))))))))))))))....(((....))).((((((...(((((.(((....))))))))..))))))...... ( -31.10)
>DroSec_CAF1 15887 104 - 1
UCUGCACUACAUCGAAAUAUAUACAUAUGUAUGUAU--GUGUGUUUCGAGAGCUGAAAAGUGGGCGUUAAGUUGGCUAAUGAAAAUUGCCAGGCAACGCUGAAAAG
...........(((((..((((((((((....))))--)))))))))))..(((....))).((((((...(((((.(((....))))))))..))))))...... ( -30.20)
>DroEre_CAF1 17387 103 - 1
UCUGCACUGCAUAGACA-ACAUACAUACAUACAUGU--GUAUGUUUCGAGAGCUGAAAAGUGGGCGUUAGGUUGCCUAAUGAAAAUUACCAGGCAACGCUGAAAAG
((.((...((...((.(-(((((((((......)))--)))))))))....(((....)))..)).....((((((((((....)))...))))))))).)).... ( -28.90)
>consensus
UCUGCACUACAUAGAAAUAUAUACAUAUAUAUGUGU__GUGUGUUUCGAGAGCUGAAAAGUGGGCGUUAAGUUGGCUAAUGAAAAUUGCCAGGCAACGCUGAAAAG
.............((...((((((..(((....)))..)))))).))....(((....))).((((((...(((((.(((....))))))))..))))))...... (-17.59 = -16.93 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:23 2006