Locus 3590

Sequence ID X_DroMel_CAF1
Location 9,621,120 – 9,621,227
Length 107
Max. P 0.533553
window5880

overview

Window 0

Location 9,621,120 – 9,621,227
Length 107
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 93.47
Mean single sequence MFE -15.38
Consensus MFE -12.00
Energy contribution -11.96
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.78
SVM decision value 0.00
SVM RNA-class probability 0.533553
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9621120 107 - 22224390
AAAUUACAUGUUGCAGGCCACCGAAAGAAAUUAUGAAUUAUUACGGAAAAUAAGA--------AAAUAAGAAAAGCAAAGGAGGGAAAAUGCAUGCAUGGAAACUAAGACAAGGA
......(((((((((..((.((........((((...(((((......)))))..--------..))))..........))..))....)))).)))))................ ( -16.07)
>DroSec_CAF1 81577 107 - 1
AAAUUACAUGUUGCAGGCCACCGAGAGAAAUUAUGAAUUAUUACAGAAAAUAAGA--------AAAUAAGAAAAGCAAAGGAGGGAAAAUGCAUGCAUGGAAACUAAGACAAGGA
......(((((((((..((.((........((((...(((((......)))))..--------..))))..........))..))....)))).)))))................ ( -16.07)
>DroSim_CAF1 67183 107 - 1
AAAUUACAUGUUGCAGGCCACCGAGAGAAAUUAUGAAUUAUUACGGAAAAUAAGA--------AAAUAAGAAAAGCAAAGGAGGGAAAAUGCAUGCAUGGAAACUAAGACAAGGA
......(((((((((..((.((........((((...(((((......)))))..--------..))))..........))..))....)))).)))))................ ( -16.07)
>DroEre_CAF1 86125 107 - 1
AAAUUACAUGUUGCAGGCCACCGAGAGAAAUUAUGAAUUAUUACGGAAAAUACGA--------AAAUAAGAAAAGCAAAGGAGGGAAAAUGAAGGCAUGGAAACUGAGACAAGGA
......(.(((..(((.(((((..((....))...........((.......)).--------..............................))..)))...)))..))).).. ( -11.50)
>DroYak_CAF1 85964 115 - 1
AAAUUACAUGUUGCAGGCCACCGAAAGAAAUUAUGAAUUAUUACGGAAAAUACGAAUAUAAGAAAAUAAGAAAAGCAACGGAGGGAAAAUGCAUGCAUGCCAACUAAGACAAGGA
......(((((((((..((.(((.......((((...((((..((.......))...))))....)))).........)))..))....)))).)))))................ ( -17.19)
>consensus
AAAUUACAUGUUGCAGGCCACCGAGAGAAAUUAUGAAUUAUUACGGAAAAUAAGA________AAAUAAGAAAAGCAAAGGAGGGAAAAUGCAUGCAUGGAAACUAAGACAAGGA
......(((((((((..((.((..((....))......((((......))))...........................))..))....)))).)))))................ (-12.00 = -11.96 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:14 2006