| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,609,268 – 9,609,371 |
| Length | 103 |
| Max. P | 0.505355 |
| Location | 9,609,268 – 9,609,371 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 85.49 |
| Mean single sequence MFE | -16.73 |
| Consensus MFE | -12.32 |
| Energy contribution | -12.65 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.505355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9609268 103 + 22224390 ACAAAUUUUCACAGUGACAAAUUUCUGGCCGGGCUC--CUGUCCUCCCC-UCCCCUGCGCCUCAGCCCAUUUGUGCAUUUCCCAUUUUCCAUUUUCCGGACACACA .............(((((((((....((..((((..--..))))..)).-......((......))..)))))).............(((.......))))))... ( -15.40) >DroSec_CAF1 67929 90 + 1 ACAAAUUUUCACAGUGACAAAUUUCUGGCCGGGCUCUCCU----------------GCCCCUCUGCCCAUUUGUGCAUUUCCCAUUUUCCAUUUUCCGGACACACA .............(((((((((....(((.((((......----------------))))....))).)))))).............(((.......))))))... ( -18.50) >DroSim_CAF1 55480 106 + 1 ACAAAUUUUCACAGUGACAAAUUUCUGGCCGGGCUCUCCUGCCCUCCUCCCCUCCUGCCCCUCUGCCCAUUUGUGCAUUUCCCAUUUCCCAUUUUCCGGACACACA .............(((((((((....(((.((((......)))).......(....).......))).))))))............(((........))))))... ( -16.30) >consensus ACAAAUUUUCACAGUGACAAAUUUCUGGCCGGGCUCUCCUG_CCUCC_C__C_CCUGCCCCUCUGCCCAUUUGUGCAUUUCCCAUUUUCCAUUUUCCGGACACACA .............(((((((((....(((.((((......................))))....))).))))))..............((.......)).)))... (-12.32 = -12.65 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:01 2006