Locus 3581

Sequence ID X_DroMel_CAF1
Location 9,607,126 – 9,607,243
Length 117
Max. P 0.844285
window5862

overview

Window 2

Location 9,607,126 – 9,607,243
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.70
Mean single sequence MFE -35.64
Consensus MFE -31.66
Energy contribution -31.30
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.89
SVM decision value 0.76
SVM RNA-class probability 0.844285
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9607126 117 - 22224390
UUAAUGGCGCCACCA---UCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGAUUUUUCCAAGGGCCUUCCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA
....(((((((....---....(((....)))..((((.((((((.((.(((((....)))))...)).)))))))))))))..((((((..((............)).)))))))))). ( -43.00)
>DroSec_CAF1 65776 120 - 1
UUAAUGACACCACCACUACCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGAUUUUUCCAAGGGCUUUCCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA
......................(((....)))..((((.((((((.((.(((((....)))))...)).))))))))))(((..((((((..((............)).))))))))).. ( -33.90)
>DroSim_CAF1 53012 120 - 1
UUAAUGACACCACCACUACCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGAUUUUUCCAAGGGCUUUCCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA
......................(((....)))..((((.((((((.((.(((((....)))))...)).))))))))))(((..((((((..((............)).))))))))).. ( -33.90)
>DroEre_CAF1 70656 117 - 1
UUAAUAACACGACCA---CCACCUGAAAUCAGGUGACCAGGUGGGCGGUUUGGAUUUUUCCAAGGGCUUUUCGCCGCUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA
.........((.(((---(((((((....))))).....))))).)).((((((....))))))(((.....)))..(((((..((((((..((............)).))))))))))) ( -35.70)
>DroYak_CAF1 69844 117 - 1
UUAAUAACACGACCA---GCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGACUUUUCCAAGGGCUUUUCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA
..........((((.---.((.(((....))).))....((((((.((.(((((....)))))...)).))))))))))(((..((((((..((............)).))))))))).. ( -31.70)
>consensus
UUAAUGACACCACCA___CCAACUGAAAUCAGGUGACCAGGUGGGCGGAUUGGAUUUUUCCAAGGGCUUUCCACCGGUCGGCAAUUUGUUGCACAAUUCUAUUUACGUAAGCAGAGCCGA
......................(((....)))..((((.((((((.((.(((((....)))))...)).))))))))))(((..((((((..((............)).))))))))).. (-31.66 = -31.30 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:58 2006