| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,089,408 – 1,089,505 |
| Length | 97 |
| Max. P | 0.999428 |
| Location | 1,089,408 – 1,089,505 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 74.59 |
| Mean single sequence MFE | -42.56 |
| Consensus MFE | -22.44 |
| Energy contribution | -22.96 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.53 |
| SVM decision value | 3.59 |
| SVM RNA-class probability | 0.999428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1089408 97 - 22224390 UUGUGGUGUGAGAACGACACGGAACGGUUGGAAGG-GAACUGGAGGGGGUAGGGC---GAGCGGCAGCUGCACACUUCCGGCUUCCUUUUCGGCCUUGUUC- .((((.(((....))).))))((((((((((((((-((((((((((..((((.((---.....))..))))...))))))).)))))))))))))..))))- ( -42.30) >DroSec_CAF1 11005 89 - 1 ---UGGUGUGGGAACGACACGGAACGGCUGGAAGG-GAACUGGAGGGGGU--------GAGCGGCAGCUGCACACUUCCGGAUUCCUUUUCGGCCUUGUUC- ---..(((((....).)))).((((((((((((((-((((((((((..((--------((((....))).))).))))))).)))))))))))))..))))- ( -45.60) >DroEre_CAF1 13618 97 - 1 CUGUGGUUUGGGAACCAUGCGGAACGGCUGGAAGG-GAACUGGAGGAGGUGGGGC---GAGCAGCAGCUGCACACUUCCGGCUUCCUUUUCGGCCUUUUCC- ..((((((....))))))..((((.((((((((((-((((((((((..(((.(((---........))).))).))))))).)))))))))))))..))))- ( -48.90) >DroYak_CAF1 10188 96 - 1 -UGUGGUGUGGGAACGAUAGGGAACGGCUGGAAGA-GAUCUGGAGG-GGUGGGGC---GAGCAGCAGCUGCACACUUCCGGCUUCCUUUUCGGCCUUUUCCC -(((.((......)).)))(((((.(((((((((.-((.(((((((-.(((.(((---........))).))).)))))))..)).)))))))))..))))) ( -41.60) >DroAna_CAF1 24594 80 - 1 ----------AUAACCAC--GUAGGUGGUGGAGGGGGGAUCGGAG---CUAGGGGCAGCAGCAGCAGCUGCACACUUCCGGCUUCCUUUUCGGUC------- ----------...(((((--....)))))(((((((((..(((((---(.....)).(((((....))))).....))))..)))))))))....------- ( -34.40) >consensus _UGUGGUGUGGGAACGACACGGAACGGCUGGAAGG_GAACUGGAGG_GGUAGGGC___GAGCAGCAGCUGCACACUUCCGGCUUCCUUUUCGGCCUUGUCC_ .........................((((((((((.((((((((((..((((...............))))...))))))).)))))))))))))....... (-22.44 = -22.96 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:26 2006