| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,088,672 – 1,088,768 |
| Length | 96 |
| Max. P | 0.931001 |
| Location | 1,088,672 – 1,088,768 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 81.57 |
| Mean single sequence MFE | -22.60 |
| Consensus MFE | -15.56 |
| Energy contribution | -17.42 |
| Covariance contribution | 1.86 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1088672 96 - 22224390 ACCGAUACACUUCUCGGGCCUGCAAAAGGUCUAUAUGUUUUUGUAUUUCAAACCAUUAUCGAAGAUUUGCAACU---CUGCUAAAAAUAGUAGUAGUAA .((((........))))...((((((...((.(((....((((.....))))....))).))...))))))(((---((((((....)))))).))).. ( -19.70) >DroSec_CAF1 10296 82 - 1 ACCGAUACAGUUCUUGGACCUGCAA-AGGUCUAUAUGCCAUUGUAUUUUAAACUAUUAUCGAAGAUUAGC----------------AUGGUAGUAGUAA ...((((((((...(((((((....-)))))))......))))))))....((((((((((.........----------------.)))))))))).. ( -21.20) >DroSim_CAF1 9318 98 - 1 ACCGAUACAGUUCUUGGACCUGCAAAAGGUCUAUAUGCUUUUGUAUUUUAAACUAUUAUCGAAGAUUUGCAACUGCUCUGC-AAAAAUGGUAGUAGUAA ...((((((((...(((((((.....)))))))...))...))))))....((((((((((....((((((.......)))-)))..)))))))))).. ( -26.90) >consensus ACCGAUACAGUUCUUGGACCUGCAAAAGGUCUAUAUGCUUUUGUAUUUUAAACUAUUAUCGAAGAUUUGCAACU___CUGC_AAAAAUGGUAGUAGUAA ...(((((((..(.(((((((.....)))))))...)...)))))))....((((((((((.......(((.......)))......)))))))))).. (-15.56 = -17.42 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:25 2006