| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,438,649 – 9,438,760 |
| Length | 111 |
| Max. P | 0.583191 |
| Location | 9,438,649 – 9,438,760 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 70.48 |
| Mean single sequence MFE | -24.76 |
| Consensus MFE | -9.75 |
| Energy contribution | -11.75 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9438649 111 + 22224390 UUG--CCGUCAUUUCCU--UUGGCGAUCUUGUU-UUAUUGCCGUUGUAUUUAGCGGAUAAUUGGGGUUAUUAGUUUAUAACUCUUUUGUUUUCCGCGCCA-UUAAAAUAAUUUUGUU- (((--(((.........--.))))))..(((((-(((.((.(..((....))(((((.(((.((((((((......))))))))...))).)))))).))-.)))))))).......- ( -26.00) >DroVir_CAF1 18367 101 + 1 CCGCGACGCAGUUUUCUCAUUGCUGUUGCUUUUU----UUUUCUUCUCUUCUUUGGAUGAUUGCCGUUAUUAUUUUAUUACA-------------CACAACUGCAAAUUAUUUUGUGU ..((((((((((......))))).))))).....----................((((((((((.(((..............-------------...))).)).))))))))..... ( -15.23) >DroEre_CAF1 20636 113 + 1 UUGCGCCGUCAUUUCCU--UUGGCGAUCUUGUU-GUAUUGCUGUUGUUUUCAGCGGAUAAUUGGGGUUAUUAGCUUAAAACUCUUUUGUUAUCCGCGCCA-CGAAAAUAAUUUGGUU- ....((((.........--..(((((((.....-).))))))(((((((((.(((((((((.((((((..........))))))...)))))))))....-.))))))))).)))).- ( -30.50) >DroYak_CAF1 21154 111 + 1 UUG--CCGUCAUUUCCU--UUGGCGAUCUUGUU-UUAUUGACGUUGUAUUCAACGGAUAAUUGGGGUUAUUAGUUUAUAACUCUUUUGUUUUCCGCGCCA-UGAAAAUUAUUUGGUU- ..(--(((...((((..--.(((((.....(((-.....)))((((....))))(((.(((.((((((((......))))))))...))).))).)))))-.))))......)))).- ( -27.30) >consensus UUG__CCGUCAUUUCCU__UUGGCGAUCUUGUU_UUAUUGCCGUUGUAUUCAGCGGAUAAUUGGGGUUAUUAGUUUAUAACUCUUUUGUUUUCCGCGCCA_UGAAAAUAAUUUGGUU_ ....................(((((...............((((((....))))))......((((((((......))))))))...........))))).................. ( -9.75 = -11.75 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:30 2006