Locus 352

Sequence ID X_DroMel_CAF1
Location 1,085,422 – 1,085,527
Length 105
Max. P 0.586185
window533

overview

Window 3

Location 1,085,422 – 1,085,527
Length 105
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 82.56
Mean single sequence MFE -22.50
Consensus MFE -16.40
Energy contribution -17.04
Covariance contribution 0.64
Combinations/Pair 1.19
Mean z-score -1.60
Structure conservation index 0.73
SVM decision value 0.11
SVM RNA-class probability 0.586185
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1085422 105 - 22224390
UACUCGAGAUAUAUGUAGAUACCAUACAG-CCAUGCCAUCAUGGUAUCAUAGCUUCUGAAUCAUAUCCUUAGGUGAUUCAUUCUUGGAAACCAUGGUUUGUUAUCA
...((((((........((((((((...(-(...))....))))))))........((((((((........)))))))).))))))((((....))))....... ( -24.00)
>DroSec_CAF1 7076 101 - 1
UACUCGAGAUAU----GGAUACCGUACAG-CCAUGCCAUCAUGGUAUCAUAGCUUCUGAAUCAUAUCCUUAAGUGGUUCAUUCUUGGAAACCAUGGUUUGUUAUCG
...((((((...----.((((((((...(-(...))....))))))))........((((((((........)))))))).))))))((((....))))....... ( -22.70)
>DroSim_CAF1 5647 101 - 1
UACUCGAGAUAU----GGAUACCAUACAG-CCAUGUCAUCAUGGUAUCAUAGCUUCUGAAUCAUAUCCUUAGGUGAUUCAUUCUUGGAAACCAUGGUUUGUUAUCG
....((((((((----((...........-)))))))((((((((.((........((((((((........))))))))......)).))))))))......))) ( -27.04)
>DroEre_CAF1 9702 102 - 1
UACUUGAGAUAU-UGUGGUUACCAUACAGACCAUACC---UUUGUAUCAUAACUUCUGAAUCAUAUCCUUGGGUGAUUCAUUCUCGGAAACCUUGGCUUGUUAUCU
.....((((...-.(.(((((..(((((((.......---)))))))..))))).)((((((((........)))))))).))))(....)............... ( -19.80)
>DroYak_CAF1 6253 89 - 1
UACUUGAGAUA----UGGUUACCAAACA-------------UUGUAUCACAACUUCUGAAUCAUAUCCUUAGGUGAUUCAUUAUCGGGAACCUUGGUUUCUUAUCA
(((((((((((----(((((........-------------(((.....)))......)))))))).))))))))..........((((((....))))))..... ( -18.94)
>consensus
UACUCGAGAUAU___UGGAUACCAUACAG_CCAUGCCAUCAUGGUAUCAUAGCUUCUGAAUCAUAUCCUUAGGUGAUUCAUUCUUGGAAACCAUGGUUUGUUAUCA
...((((((........((((((((...............))))))))........((((((((........)))))))).))))))((((....))))....... (-16.40 = -17.04 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:24 2006