Locus 3519

Sequence ID X_DroMel_CAF1
Location 9,437,474 – 9,437,565
Length 91
Max. P 0.931826
window5765

overview

Window 5

Location 9,437,474 – 9,437,565
Length 91
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 83.17
Mean single sequence MFE -21.20
Consensus MFE -15.39
Energy contribution -15.39
Covariance contribution -0.00
Combinations/Pair 1.17
Mean z-score -2.27
Structure conservation index 0.73
SVM decision value 1.22
SVM RNA-class probability 0.931826
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9437474 91 + 22224390
---------------UGUUGUUAUGCAAAUGCUAA-------------AAAGCAUUUCAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA
---------------(((((((.((.(((((((..-------------..))))))))))))))))......(((....((((....(((...((....)))))....))))..))).. ( -20.80)
>DroSec_CAF1 18991 91 + 1
---------------UGUUGUUAUGCAAAUGCUAA-------------AAAGCAUUUCAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA
---------------(((((((.((.(((((((..-------------..))))))))))))))))......(((....((((....(((...((....)))))....))))..))).. ( -20.80)
>DroEre_CAF1 19398 91 + 1
---------------UGUUGUUAUGCAAAUGCUAA-------------AAAGCAUUACAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA
---------------((((((..(...((((((..-------------..))))))....)..))))))...(((....((((....(((...((....)))))....))))..))).. ( -18.80)
>DroYak_CAF1 19972 106 + 1
UUUUUUGUUUUGUAUUGUUGUUAUGCAAAUGCUAA-------------AAAGCAUUUCAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA
......(((((((..(((((((.((.(((((((..-------------..)))))))))))))))))))))))((....((((....(((...((....)))))....))))..))... ( -25.50)
>DroAna_CAF1 16559 104 + 1
---------------UGUUGUUACGCAAAUGGUAAAUUGCAAACCGCAAAGGCAUUUCAAGCGACGGCAAAAUGCGAUUUUCGAAAGUGUGAAAUGGAAAUGCAACGAGGAAACACAAA
---------------.((((((((((...(((.((((((((....((....)).......((....))....)))))))))))...)))))..((....)))))))..(....)..... ( -20.10)
>consensus
_______________UGUUGUUAUGCAAAUGCUAA_____________AAAGCAUUUCAAACGACAGCAAAAUGCAAUUUUCGAAAGUGUGAAAUGGAAAUGCAAAAGCGAAUGGCGAA
...............((((((..(..(((((((.................)))))))...)..))))))...(((....((((....(((...........)))....))))..))).. (-15.39 = -15.39 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:28 2006