Locus 3503

Sequence ID X_DroMel_CAF1
Location 9,401,036 – 9,401,156
Length 120
Max. P 0.819041
window5736

overview

Window 6

Location 9,401,036 – 9,401,156
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.42
Mean single sequence MFE -41.42
Consensus MFE -33.48
Energy contribution -33.28
Covariance contribution -0.20
Combinations/Pair 1.15
Mean z-score -1.66
Structure conservation index 0.81
SVM decision value 0.67
SVM RNA-class probability 0.819041
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9401036 120 + 22224390
AUUUUGGCCAAUCCAAGGGUAAUGCGUGCUUCUGCAGGUUCCGGCAGUUGGAGAUCGGAUUUGAAGGACUCCAACGAGGAUUCGGGUGCGGAAAACUUGGGUUGCAGCUGACUAAGAUGA
...(..(((((((((((..(..(((((((....)))(..(((....(((((((.((.........)).)))))))..)))..)...))))..)..)))))))))..))..)......... ( -38.40)
>DroSec_CAF1 1002 120 + 1
AUUUUGGCUAAUCCAAGGGUAAUGCGUGCUUCUGCAGGUUCCGACAGGUGGAGAUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCGGGAAACUUGGGUUGCAGCUGACUAAGACGA
...(..(((((((((((((....((.(((....))).)).))............(((.(((((((..((((....)))).))))))).)))....))))))))..)))..)......... ( -37.20)
>DroSim_CAF1 454 120 + 1
AUUUUGGCUAAUCCAAGGGUAAUGCGUGCUUCUGCAGGUUCCGACAGGUGGAGAUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCGGAAAACUUGGGUUGCAGCUGACUAAGAUGA
...(..(((((((((((((....((.(((....))).)).))............(((.(((((((..((((....)))).))))))).)))....))))))))..)))..)......... ( -37.20)
>DroEre_CAF1 1005 120 + 1
AUUUUGGCCAAUCCGAGGGUAAUACGUGCUUCUGCUGGUUCCGGCAGGUGGAGGUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCUGCAAACUUGGGUUGCAGUUGGCUAAGAUGA
(((((((((((((((((.............(((((((....)))))))((((((((.........)))))))).......)))))))(((((((.(....)))))))))))))))))).. ( -51.20)
>DroYak_CAF1 696 120 + 1
AUUUUGGCCAAUCCGAGGGUAAUACGUGCUUCUGCAGGCUCCGGCAGGUAAAGGUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCGGAGAACUUGGGUUGCAGCUGGCUAAGAUGU
(((((((((((((((((((((.....))))((((((...((((((........))))))((((((..((((....)))).))))))))))))...)))))))......)))))))))).. ( -43.10)
>consensus
AUUUUGGCCAAUCCAAGGGUAAUGCGUGCUUCUGCAGGUUCCGGCAGGUGGAGAUCGGAUUUGAAGGCCUCCAAAGAGGAUUCGGGUGCGGAAAACUUGGGUUGCAGCUGACUAAGAUGA
...(..(((((((((((((....((.(((....))).)).))............(((.(((((((..((((....)))).))))))).)))....)))))))))..))..)......... (-33.48 = -33.28 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:02 2006