Locus 3493

Sequence ID X_DroMel_CAF1
Location 9,386,230 – 9,386,350
Length 120
Max. P 0.643625
window5708

overview

Window 8

Location 9,386,230 – 9,386,350
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.69
Mean single sequence MFE -32.40
Consensus MFE -23.51
Energy contribution -23.07
Covariance contribution -0.44
Combinations/Pair 1.15
Mean z-score -1.96
Structure conservation index 0.73
SVM decision value 0.23
SVM RNA-class probability 0.643625
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9386230 120 - 22224390
UUUCCAGGAAGGCAACGUGAAAGGAAGCGACCGACAGGCAGCCAGGAAAAUGGCACACAAAAAAUUGUAGUCAAGGAGCAAUAUUUUCACUGCAUCCUCAAUGCAGGCAAAAUGCUACAC
.....((((..(((..(((((((...((..((....(((.((((......))))..((((....)))).)))..)).))....)))))))))).)))).......(((.....))).... ( -28.20)
>DroSec_CAF1 245 120 - 1
UUUCCAGGAAGGCAACGUGAAAGGAAGUGACCGACAGGCAGCCAGGAAAAUGGCACACAAAAAAUUGGAGUCAAGCAACAAUAUUUUGGCUGCAUCCUCAAUGCAGGCAAAAUGCUCCAC
.((((.....(....)......))))(((.((....))..((((......)))).))).......((((((...........((((((.((((((.....)))))).)))))))))))). ( -34.80)
>DroSim_CAF1 3321 120 - 1
UUUCCAGGAAGGCAACGUGAAAGGAAGUGACCGACAGGCAGCCAGGAAAAUGGCACACAAAAAAUUGGAGUCAAGCAACAAUAUUUUCACUGCAUCCUCAAUGCAGGCAAAAUGCUCCAC
.((((.....(....)......))))(((.((....))..((((......)))).))).......((((((...........(((((..((((((.....))))))..))))))))))). ( -29.50)
>DroYak_CAF1 3713 120 - 1
UUUCCAGGUAGGCAAAGUGAAAUGCGGCGACCGACAGGCAGCCAGGAAACUGGCAAGCACAAAGUUGGAGUCGAGCAACAAUAUUUUCACUGCAUCUUCAAUGCAGGCAAAACACUCUAC
.......((((....((((...((((((..(((((..((.(((((....)))))..)).....))))).))).................((((((.....)))))))))...)))))))) ( -37.10)
>consensus
UUUCCAGGAAGGCAACGUGAAAGGAAGCGACCGACAGGCAGCCAGGAAAAUGGCACACAAAAAAUUGGAGUCAAGCAACAAUAUUUUCACUGCAUCCUCAAUGCAGGCAAAAUGCUCCAC
................(((.........(.((....))).((((......)))).))).......((((((...........(((((..((((((.....))))))..))))))))))). (-23.51 = -23.07 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:37 2006