| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,385,462 – 9,385,569 |
| Length | 107 |
| Max. P | 0.510139 |
| Location | 9,385,462 – 9,385,569 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.55 |
| Mean single sequence MFE | -40.87 |
| Consensus MFE | -32.53 |
| Energy contribution | -32.09 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9385462 107 + 22224390 ACCCUUGGCUGGACAAAUGGGUCAUUAAUUGACAGCCAACGGGUUGCGGGGA-----U------CCCCCUUUGCGAAUCUUCAUAACCG--UAGUGGCUGCUCGCAGUCAUGGGUUAAGG ((((.(((((((((......))).......((((((((((((.((((((((.-----.------..))))..))))..........)))--)..)))))).)).)))))).))))..... ( -39.70) >DroSim_CAF1 2573 104 + 1 ACCCUUGGCUGGCCAAAUGGGUCAUUAAUUGACAGCCAGCGGG-UGCGGGGA-----U------CC--CUUUGCGAAUCUUCAUAACCG--UAGUGGCUGCUCGCAGUCAUGGGUUAAGG ((((((((((..((....))((((.....)))))))))).)))-)((((((.-----.------..--)))))).........(((((.--..(((((((....))))))).)))))... ( -39.60) >DroYak_CAF1 2875 119 + 1 ACCCUUGGCUGGCCAAAUGGGUCAUUAAUUGACAGCCAGCGGG-UGCGGAAAGGGGGUAACUGCUUCCCUGUGCGAAUCUUCAUAACCAGUGAGUGGCUGCUCGCAGUCAUGGGUUAAGG ((((((((((..((....))((((.....)))))))))).)))-)(((...(((((((....)).))))).))).........(((((.....(((((((....))))))).)))))... ( -43.30) >consensus ACCCUUGGCUGGCCAAAUGGGUCAUUAAUUGACAGCCAGCGGG_UGCGGGGA_____U______CCCCCUUUGCGAAUCUUCAUAACCG__UAGUGGCUGCUCGCAGUCAUGGGUUAAGG .((((((((((..(((.(((....))).))).))))))).))).(((((((.............))))....)))........(((((.....(((((((....))))))).)))))... (-32.53 = -32.09 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:36 2006