Locus 3480

Sequence ID X_DroMel_CAF1
Location 9,340,700 – 9,340,801
Length 101
Max. P 0.901127
window5691

overview

Window 1

Location 9,340,700 – 9,340,801
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 94.27
Mean single sequence MFE -20.59
Consensus MFE -18.63
Energy contribution -19.13
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.90
SVM decision value 1.02
SVM RNA-class probability 0.901127
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9340700 101 + 22224390
UCGACCGGCAAGAGACAGCUUCUUCUUUUUCUGGUUCACAUGUCUUCGUUUGUCUAAAAAAAAAAAUUUCAAACGAUUUUCUUCGGUGGUUUUCCACAUUU
..((((((.((((((........)))))).)))))).........(((((((.................))))))).........((((....)))).... ( -21.83)
>DroSec_CAF1 120971 97 + 1
UCGACCGGCAAGAGACAGCUUCUUCUUUUUCUGGUUCACAUAUCUUCGUUUGCCUAAA----AAAAUUUCAAACGAUUUUCUUCGGUGGUUUUCCACAUUU
..((((((.((((((........)))))).)))))).........(((((((......----.......))))))).........((((....)))).... ( -21.12)
>DroEre_CAF1 129770 96 + 1
UCGACCGGCAAGAGACAGCUUCUUCUUUUUCUGGUUCACAUGUCUUCGUUUGCCUAAA-----AAAUCUCAAACGAUUUUCUUCGCUGGUUUUCCACAUUU
..(((((((((((((((.......((......))......)))).(((((((......-----......)))))))...)))).))))))).......... ( -21.62)
>DroYak_CAF1 123637 96 + 1
UCGACCGGCAAGAGACAGCUUCUUCGUUUUCUGGUUCACAUGUCUUCGUUUGCCUAAA-----AAAUUUCAAACGAUUUUCUUUGGUGGUUUUCCACAUUU
......(((((((((((......(((.....)))......))))))...)))))....-----..........(((......)))((((....)))).... ( -17.80)
>consensus
UCGACCGGCAAGAGACAGCUUCUUCUUUUUCUGGUUCACAUGUCUUCGUUUGCCUAAA_____AAAUUUCAAACGAUUUUCUUCGGUGGUUUUCCACAUUU
..((((((.((((((........)))))).)))))).........(((((((.................))))))).........((((....)))).... (-18.63 = -19.13 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:22 2006