Locus 3474

Sequence ID X_DroMel_CAF1
Location 9,321,586 – 9,321,684
Length 98
Max. P 0.584035
window5684

overview

Window 4

Location 9,321,586 – 9,321,684
Length 98
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 85.91
Mean single sequence MFE -12.33
Consensus MFE -7.92
Energy contribution -8.16
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -2.05
Structure conservation index 0.64
SVM decision value 0.10
SVM RNA-class probability 0.584035
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9321586 98 + 22224390
UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGAAAUGACGAAAAAAAAAAAUCCAACCAAUUUCCCAUUCCCCAA-AUUUGUCGCCUUUUUCCUU
...((.(((....(((((((.......)))))))((((((.......................))))))..........-...))).)).......... (  -9.90)
>DroSec_CAF1 102410 95 + 1
UAUGCCGCACAUAAAUUGAAAUAAAUAUUCAAUUGGAAAUAACAAAAAAA---AAACCGACCAAUUUCCCAUUCUCCAA-AUUUGUAGCUUUUUUCCUU
...((..((....(((((((.......)))))))((((((..........---..........))))))..........-...))..)).......... ( -10.05)
>DroSim_CAF1 101421 95 + 1
UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGAAAUAACAAAAAAA---AAACCGACCAAUUUCCCAUUCCCCAA-AUUUGUCGCUUUUUUCCUU
((((.....))))(((((((.......)))))))(((((...........---(((.((((.(((((..........))-))).)))).)))))))).. ( -10.20)
>DroEre_CAF1 111264 86 + 1
UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGAAA--------AAA---AAUCCGACCAAUUUCCCAUUCCCCAA-AUUUGUCGCUGGUUUU-CC
...(((((.....(((((((.......)))))))(((..--------...---..)))(((.(((((..........))-))).))))).)))...-.. ( -12.50)
>DroYak_CAF1 102341 87 + 1
UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGGAA---------AA---AAUCCGACCAAUUUCCCAUUCCCCAAAAUUGGUCGCUUUUUUUUUU
((((.....))))(((((((.......)))))))(((((---------((---((..((((((((((...........))))))))))..))))))))) ( -19.00)
>consensus
UAUGCCGCACAUAAAUUGAAAUACAUAUUCAAUUGGAAAU_AC_AAAAAA___AAUCCGACCAAUUUCCCAUUCCCCAA_AUUUGUCGCUUUUUUCCUU
...((.((.....(((((((.......)))))))((((((.......................))))))...............)).)).......... ( -7.92 =  -8.16 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:15 2006