| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,287,668 – 9,287,760 |
| Length | 92 |
| Max. P | 0.927441 |
| Location | 9,287,668 – 9,287,760 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 73.48 |
| Mean single sequence MFE | -18.53 |
| Consensus MFE | -14.20 |
| Energy contribution | -14.54 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.927441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9287668 92 + 22224390 CGGGUUUCCCAAGGAUGUUUGAGUUGUUAAGCUGCUUUGGGACACAAAG-----CUCCCCCUUCACCCACACAACCAUCUCCCACCUCCCACCUCCC .(((........(((((.(((((((....))))((((((.....)))))-----)................))).))))).......)))....... ( -20.76) >DroSec_CAF1 69821 90 + 1 CGGGUUUCCCAAGGAUGUUUGAGUUGUUAAGCUGCUUUGGGACCCACAGUCGUCCUUCCCCAUCACCCUCACCACCA-------CCUCCCACCUCCC .(((..((((((((..((((((....))))))..)))))))))))................................-------............. ( -19.50) >DroEre_CAF1 76267 76 + 1 -GGGCUGCCCAAGGAUGUUUGAGUUGUUAAGCUGCUUUGGGACACACAA-----CACUCCCCCCACCACCACCAACA---------------CCCCC -(((.(((((((((..((((((....))))))..))))))).)).....-----.......))).............---------------..... ( -15.32) >consensus CGGGUUUCCCAAGGAUGUUUGAGUUGUUAAGCUGCUUUGGGACACACAG_____CUCCCCCAUCACCCACACCACCA_______CCUCCCACCUCCC .(((..((((((((..((((((....))))))..))))))))................))).................................... (-14.20 = -14.54 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:02 2006