Locus 3455

Sequence ID X_DroMel_CAF1
Location 9,257,424 – 9,257,523
Length 99
Max. P 0.589790
window5657

overview

Window 7

Location 9,257,424 – 9,257,523
Length 99
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 91.94
Mean single sequence MFE -32.20
Consensus MFE -27.16
Energy contribution -27.96
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.84
SVM decision value 0.11
SVM RNA-class probability 0.589790
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9257424 99 + 22224390
AAGAAAUGGCGAUGAUGGCGGCUGCGGCGGGAA--AAACAGACCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGUCUGCAGUUUCAUGACUCGCCGGCUU
(((...(((((((.((((.(((((((((.....--...((..((....))..))((((((......))..))))).)))))))))))).).)))))).))) ( -31.50)
>DroSec_CAF1 40626 98 + 1
AAGAAAUGGCGACGAUGGCGGCUGCGGCG-GAU--AAACAGGCCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGUCUGCAGUUUCAUGACUCGCCGGCUU
(((...((((((..((((.((((((((((-...--.....(((((.......))))).((......)).....)).))))))))))))...)))))).))) ( -32.20)
>DroSim_CAF1 39906 98 + 1
AAGAAAUGGCGACGAUGGCGGCUGCGGCG-GAU--AAACAGGCCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGUCUGCAGUUUCAUGACUCGCCGGCUU
(((...((((((..((((.((((((((((-...--.....(((((.......))))).((......)).....)).))))))))))))...)))))).))) ( -32.20)
>DroEre_CAF1 45225 90 + 1
AAGAAAUGGCGACGAUGGCGGCUGCGGCG-GAA--AAACAGGCCAAAUGGAAUGGCCAGGA--------ACGAUGGCUGCAGUUUCAUGACUCGGCGGCUU
(((...((.(((..((((.((((((((((-...--...).(((((.......)))))....--------......)))))))))))))...))).)).))) ( -29.30)
>DroYak_CAF1 37277 100 + 1
AAGAAAUGGCGACGAUGGCGGCUGCGGCG-GAAAAAAACAGGCCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGGCUGCAGUUUCAUGACUCGCCGGCUU
(((...((((((..((((.(((((((((.-..........(((((.......))))).((......)).......)))))))))))))...)))))).))) ( -35.80)
>consensus
AAGAAAUGGCGACGAUGGCGGCUGCGGCG_GAA__AAACAGGCCAAAAGGAAUGGCCGGGAAAUUGCCAACGGUGUCUGCAGUUUCAUGACUCGCCGGCUU
(((...((((((..((((.(((((((((............(((((.......))))).((......))......).))))))))))))...)))))).))) (-27.16 = -27.96 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:51 2006