| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,064,878 – 1,064,977 |
| Length | 99 |
| Max. P | 0.996096 |
| Location | 1,064,878 – 1,064,977 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.93 |
| Mean single sequence MFE | -23.16 |
| Consensus MFE | -16.06 |
| Energy contribution | -18.51 |
| Covariance contribution | 2.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.22 |
| Structure conservation index | 0.69 |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.990702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1064878 99 + 22224390 AUACAAUGUGUUCACUACCAUUACCAUU-----ACAUUCAAAUGAGUCCUCUAAUAGGAGGAUUCUCUCAAUUUUUUCAUGGUAAUAUUUGUAUGUACACCAA----U .......((((.((.(((.((((((((.-----..........(((((((((....))))))))).............))))))))....))))).))))...----. ( -24.25) >DroSec_CAF1 15917 105 + 1 AUACAAUGUGUUCCCUA---UUACCAUCAUGCAACAUUCGAAUGAGUCCUCUAAAAUCAGGAUUCACUCGAUUUUUCGAUGGCAAUAUAUGUAUGCACACCAAUGCAU ......(((((....((---((.(((((.........((((.((((((((........)))))))).))))......))))).)))).......)))))......... ( -25.36) >DroSim_CAF1 14816 105 + 1 AUACAAUGUGUUCCCUA---UUACCAUCAUGCAACAUUCGAAUGAGUCCUCUAAAAGGAAUCUUCACUCGAUUUUCCGAUGGCAAUAUAUGUAUGCACACCAAUGCAU ......(((((....((---((.(((((.........((((.((((((((.....))))...)))).))))......))))).)))).......)))))......... ( -19.86) >consensus AUACAAUGUGUUCCCUA___UUACCAUCAUGCAACAUUCGAAUGAGUCCUCUAAAAGGAGGAUUCACUCGAUUUUUCGAUGGCAAUAUAUGUAUGCACACCAAUGCAU ......(((((............(((((.........((((.(((((((((......))))))))).))))......)))))............)))))......... (-16.06 = -18.51 + 2.45)
| Location | 1,064,878 – 1,064,977 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.93 |
| Mean single sequence MFE | -31.63 |
| Consensus MFE | -22.28 |
| Energy contribution | -23.74 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.90 |
| Structure conservation index | 0.70 |
| SVM decision value | 2.65 |
| SVM RNA-class probability | 0.996096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1064878 99 - 22224390 A----UUGGUGUACAUACAAAUAUUACCAUGAAAAAAUUGAGAGAAUCCUCCUAUUAGAGGACUCAUUUGAAUGU-----AAUGGUAAUGGUAGUGAACACAUUGUAU .----...((((.(((.....(((((((((......(((.(((((.(((((......))))).)).))).)))..-----.)))))))))...))).))))....... ( -26.00) >DroSec_CAF1 15917 105 - 1 AUGCAUUGGUGUGCAUACAUAUAUUGCCAUCGAAAAAUCGAGUGAAUCCUGAUUUUAGAGGACUCAUUCGAAUGUUGCAUGAUGGUAA---UAGGGAACACAUUGUAU (((((...((((.....(...(((((((((((.((..((((((((.((((........)))).))))))))...))...)))))))))---)).)..))))..))))) ( -35.40) >DroSim_CAF1 14816 105 - 1 AUGCAUUGGUGUGCAUACAUAUAUUGCCAUCGGAAAAUCGAGUGAAGAUUCCUUUUAGAGGACUCAUUCGAAUGUUGCAUGAUGGUAA---UAGGGAACACAUUGUAU (((((...((((.....(...(((((((((((..((.((((((((....(((((...))))).))))))))...))...)))))))))---)).)..))))..))))) ( -33.50) >consensus AUGCAUUGGUGUGCAUACAUAUAUUGCCAUCGAAAAAUCGAGUGAAUCCUCCUUUUAGAGGACUCAUUCGAAUGUUGCAUGAUGGUAA___UAGGGAACACAUUGUAU .......((((((..........(((((((((.....((((((((.(((((......))))).))))))))........)))))))))..........)))))).... (-22.28 = -23.74 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:16 2006