Locus 3448

Sequence ID X_DroMel_CAF1
Location 9,237,751 – 9,237,849
Length 98
Max. P 0.515710
window5650

overview

Window 0

Location 9,237,751 – 9,237,849
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 72.77
Mean single sequence MFE -27.90
Consensus MFE -8.72
Energy contribution -9.36
Covariance contribution 0.64
Combinations/Pair 1.26
Mean z-score -1.67
Structure conservation index 0.31
SVM decision value -0.04
SVM RNA-class probability 0.515710
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9237751 98 - 22224390
GAGGGCGGUGGGGGGUGGGUGAGGCACAAAACGCCGGCGAAAU-UGUUUGGCAUCGUUUGGCCUAAUGCUAAUUUCGCGCCGCCUGCCACCAUAAACAA
......(((((.((((((....(((.......))).(((((((-(((..(((........)))....)).)))))))).)))))).)))))........ ( -42.30)
>DroPse_CAF1 22677 77 - 1
---------------------GGACGCAAAAAGCUGGCGAAAU-UGUUUGCCAUCCUUUGGCCUAAUGCUAAUUUCGCGCCGUCAGCCACCAUAAACAA
---------------------.(((((.....))..(((((((-(((..((((.....)))).....)).))))))))...)))............... ( -19.60)
>DroEre_CAF1 23287 98 - 1
GGGGGCGGUGGCGAGGGGGUGCGGCACAAAACGCCGGCGAAAU-UGUUUGGCAUCGUUUGGCCUAAUGCUAAUUUCGCGCCGCCUGCCACCAUAAACAA
......((((((.(((.(((.((((.......))))(((((((-(((..(((........)))....)).))))))))))).)))))))))........ ( -44.30)
>DroWil_CAF1 20702 81 - 1
-----------------AAUUGGGGAAAAAGCAGCAACAAAAUGUGUUUGAAGUCGU-UGGCCUAAUGCUAAUUUCGCGCCGUCUGCUGGCAUAAACAA
-----------------.((((((..((..((..(((((.....)).)))..))..)-)..))))))((.......))((((.....))))........ ( -13.70)
>DroPer_CAF1 23565 77 - 1
---------------------GGACGCAAAAAGCUGGCGAAAU-UGUUUGCCAUCCUUUGGCCUAAUGCUAAUUUCGCGCCGUCAGCCACCAUAAACAA
---------------------.(((((.....))..(((((((-(((..((((.....)))).....)).))))))))...)))............... ( -19.60)
>consensus
___________________U_GGGCACAAAACGCCGGCGAAAU_UGUUUGCCAUCGUUUGGCCUAAUGCUAAUUUCGCGCCGUCUGCCACCAUAAACAA
......................(((...(((((.((.((((.....)))).)).)))))(((.....((.......))))))))............... ( -8.72 =  -9.36 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:45 2006