Locus 3442

Sequence ID X_DroMel_CAF1
Location 9,224,768 – 9,224,872
Length 104
Max. P 0.922273
window5641

overview

Window 1

Location 9,224,768 – 9,224,872
Length 104
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 83.21
Mean single sequence MFE -35.82
Consensus MFE -22.92
Energy contribution -22.60
Covariance contribution -0.32
Combinations/Pair 1.10
Mean z-score -2.52
Structure conservation index 0.64
SVM decision value 1.15
SVM RNA-class probability 0.922273
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9224768 104 + 22224390
GUUGACUUGCGACCGCAACGUCGGCGAAACGGAAGCGAAAAUAAUCGGGCGGAAGUGGGCGAAAGUGGGCGAA-AGUUGG--CGAAAGUGGGCGCGGUGGGUGGGCU
(((.((((...(((((..((((.((....((....)).......(((.((....))...)))..)).))))..-.(((.(--(....)).)))))))))))).))). ( -35.50)
>DroSec_CAF1 7585 106 + 1
GUUGACUUGCGACCGCAGCGCCGGCGAAACGGAAGCGAAAAUAAUCGGCCGGAAGUGGGCGAAAGUUGGCGAA-AGUGGAAGAGAAAGUGGGCGCGGUGGCUGGGCU
.....((.((.(((((.((.(((((....(....)(((......))))))))..((.(((....))).))...-.................))))))).)).))... ( -37.50)
>DroSim_CAF1 18995 106 + 1
GUUGACUUGCGACCGCAACGCCGGCGAAACGGAAGCGAAAAUAAUCGGGCGGAAGUGGGCGAAAGUUGGCGAA-AGUGGGAGAGAAAGUGGGCGCGGUGACUGCGCU
....((((.(..((((..((((.......(....)(((......)))))))...((.(((....))).))...-.))))..)...)))).((((((....).))))) ( -37.50)
>DroEre_CAF1 10365 95 + 1
GUUGACUUGCGACCGCAACGCCGGCGAAACGGAAGCGAAAAUAAUCGGGCGGAAGUGGGCGAAAGUUGGCGAAGAGUUGG------------UGGGAGAGUGGGCGU
(((.((((....((((..((((.......(....)(((......)))))))...((.(((....))).)).........)------------)))..)))).))).. ( -30.60)
>DroYak_CAF1 7914 94 + 1
GUUGACUUGCGACCGCAACGCCGGCGAAACGGAAGUGAAAAUAAUCGGCCGGAAGUGGGCGUAAGUUGGCAAA-AGUGGG------------CGUGGUGGGUCGUCU
((..(((((((.((((....(((((...((....))((......)).)))))..)))).)))))))..))...-...(((------------((........))))) ( -38.00)
>consensus
GUUGACUUGCGACCGCAACGCCGGCGAAACGGAAGCGAAAAUAAUCGGGCGGAAGUGGGCGAAAGUUGGCGAA_AGUGGG___GAAAGUGGGCGCGGUGGCUGGGCU
((..((((.((.((((....(((.(....(....)(((......)))).)))..)))).)).))))..))..................................... (-22.92 = -22.60 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:37 2006