Locus 3439

Sequence ID X_DroMel_CAF1
Location 9,204,506 – 9,204,614
Length 108
Max. P 0.706462
window5637

overview

Window 7

Location 9,204,506 – 9,204,614
Length 108
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 91.50
Mean single sequence MFE -30.08
Consensus MFE -21.45
Energy contribution -21.95
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.65
Structure conservation index 0.71
SVM decision value 0.36
SVM RNA-class probability 0.706462
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9204506 108 + 22224390
UAUGUGUGUGUGUGUGGGGAAUGGGGAAUGCUUGUUUUCUAUCCUGGAUUUAGCACAAAAGUUUUUGCUCUUUCGCUCGAUACAUUUAGGUUCACACAUAUAUAUAUA
((((((((((((((((((((.(((..(((....)))..)))))))..(((.(((..((.(((....))).))..))).)))...........)))))))))))))))) ( -32.10)
>DroSec_CAF1 34027 99 + 1
UAUGUGU----GUGUGGGGAAUGGGGAAUGCUUGUUUUCUAUCCUGGAUUUAGCACAAAAGUGUUUGCUCUUUCGCUCGAUACAUUUAGGUUCACACAUAUAU-----
(((((((----((((((..((..((.....))..))..))).(((((((..(((((....))))).((......)).......)))))))..)))))))))).----- ( -28.90)
>DroEre_CAF1 16046 102 + 1
UAUGUGU----GU--GGGGAAUGGGGAAUGCUUGUUUUCUAUCCUGGAUUUAGCACAAAAGUGUUGGCUCUUUCGCUCGAUACAUUUAGGUUCACACAUACAUACAUA
(((((((----((--(((((.(((..(((....)))..)))))))((((((((.......((((((((......)).))))))..)))))))).)))))))))).... ( -31.90)
>DroYak_CAF1 3323 103 + 1
UAUGUGU----GU-UGGGGAAUGGGGAAUGCAUGUUUUCUAUCCUGGAUUUAGCACAAAAGUGUUAGCUCUUUCGCUCGAUACAUUUAGUUUCACACAUACAUACAUA
(((((((----((-((((((.(((..(((....)))..)))))))(((.(((((((....))))))).))).......((.((.....)).))...)).))))))))) ( -27.40)
>consensus
UAUGUGU____GU_UGGGGAAUGGGGAAUGCUUGUUUUCUAUCCUGGAUUUAGCACAAAAGUGUUUGCUCUUUCGCUCGAUACAUUUAGGUUCACACAUACAUACAUA
(((((((.........((((.(((..(((....)))..)))))))(((((((((((....))))..((......))..........))))))))))))))........ (-21.45 = -21.95 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:33 2006