| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,128,706 – 9,128,804 |
| Length | 98 |
| Max. P | 0.784905 |
| Location | 9,128,706 – 9,128,804 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 95.34 |
| Mean single sequence MFE | -25.62 |
| Consensus MFE | -23.74 |
| Energy contribution | -23.18 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9128706 98 + 22224390 GCAAUUUCUGCCCUCGCAGAUAAGCUGACGUUCUUCUCACGCUAUUAUAUUCCCAGCGAUAAGAACUAUUUCCCUUCGAUGUGAUAAGUCGGAGGUAA ((....(((((....)))))...))....((((((....((((...........))))..))))))......((((((((.......))))))))... ( -25.30) >DroSec_CAF1 4722 95 + 1 GCAAUUUCUGCGCUCGCAGAUAAGCUGACGUUCUUCUCACGCU---AUAUUCCCAGCGAUAAGAACUAUUUCCCUUCGAUGUGAUAAGUCGGAGGUAA ((....(((((....)))))...))....((((((....((((---........))))..))))))......((((((((.......))))))))... ( -27.40) >DroSim_CAF1 3382 95 + 1 GCAAUUUCUGCCCUCGCAGAUAAGCUGACGUUCUUCUCACGCU---AUAUUCCCAGCGAUAAGAACUAUUUCCCUUCGAUGUGAUAAGUCGGAGGUAA ((....(((((....)))))...))....((((((....((((---........))))..))))))......((((((((.......))))))))... ( -26.30) >DroYak_CAF1 4697 95 + 1 GCAAUUUCUGCCCUCGCAGAUAAGCUGACGUUUUUCUCACGCU---AUAUGGCCAGCGAUAAGAACUAUUUCUCUUCGGUGUGAUAAGUCGGAGGUAA ......(((((....)))))....(((((.....((.((((((---....)))...(((..((((....))))..)))))).))...)))))...... ( -23.50) >consensus GCAAUUUCUGCCCUCGCAGAUAAGCUGACGUUCUUCUCACGCU___AUAUUCCCAGCGAUAAGAACUAUUUCCCUUCGAUGUGAUAAGUCGGAGGUAA ((....(((((....)))))...))....((((((....((((...........))))..))))))......((((((((.......))))))))... (-23.74 = -23.18 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:45 2006