| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,111,099 – 9,111,219 |
| Length | 120 |
| Max. P | 0.835014 |
| Location | 9,111,099 – 9,111,219 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.23 |
| Mean single sequence MFE | -30.46 |
| Consensus MFE | -23.06 |
| Energy contribution | -22.78 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9111099 120 + 22224390 CUCCUAUACUAACAAAGAUAUUUCGAUCAUUGGAUUGGAAUAAAAGGGAUAAUGGCUUUUUCUCUCUCUGCAUGCAAGUGCACCGGAAACGGAACAACGGCCAUAACGGGAGCACAAAUA (((((.............((((((((((....)))))))))).........((((((...........(((((....)))))(((....)))......))))))...)))))........ ( -34.10) >DroSec_CAF1 2360 113 + 1 CUCCUCUGCUAACAAAGAUUUUUCGAUCAUUGU-------GAGAAGGGAUCAUGGCUUUUUCUUUCUCUGCAUGCAAGUGCACCGGAAACGGAACAACGGCCAUAACGGGAGCACAAAUA (((((((.((.((((.((((....)))).))))-------.)).)).....((((((...........(((((....)))))(((....)))......))))))...)))))........ ( -31.00) >DroSim_CAF1 2448 113 + 1 CUCCUCUACUAACAAAGAUUUUUCGAUCAUUGU-------GAGAAGGGAUCAUGGCUUUUUCUCUCUCUGCAUGCGAGUGCACCGGAAACGGAACAACGGCCAUAACGGGAGCACAAAUA (((((((.((.((((.((((....)))).))))-------.)).)).....((((((...........(((((....)))))(((....)))......))))))...)))))........ ( -31.00) >DroEre_CAF1 2467 101 + 1 -------AA-----ACGAUUUUUCGAUCAUUGU-------GAGAAAGGAUCUCCGCUUUUUCUCUCUCUGCAUGCAAAUGCACCGGAAACGGAACAACGGCCAUAACGGGAGCACAAAUA -------..-----.(((....)))....((((-------((((((((........)))))))((((((((((....)))))(((....)))...............))))))))))... ( -26.00) >DroYak_CAF1 2496 106 + 1 -------AAAAAGAACGAUUUUUCGAUCAUUGU-------GAGAAGGGAUCAUCGCCUUUUCUCUCUCUGCAUGCAAAUGCACCGGAAACGGAACAACGGCCAUAACGGGAGCACAAAUA -------.....((.(((....))).)).((((-------((((((((.....).))))))).((((((((((....)))))(((....)))...............))))).))))... ( -30.20) >consensus CUCCU_UACUAACAAAGAUUUUUCGAUCAUUGU_______GAGAAGGGAUCAUGGCUUUUUCUCUCUCUGCAUGCAAGUGCACCGGAAACGGAACAACGGCCAUAACGGGAGCACAAAUA ................((((....)))).((((.......(((((((........))))))).((((((((((....)))))(((....)))...............))))).))))... (-23.06 = -22.78 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:29 2006