Locus 340

Sequence ID X_DroMel_CAF1
Location 1,062,903 – 1,063,019
Length 116
Max. P 0.639144
window517

overview

Window 7

Location 1,062,903 – 1,063,019
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.21
Mean single sequence MFE -21.80
Consensus MFE -13.74
Energy contribution -14.68
Covariance contribution 0.94
Combinations/Pair 1.13
Mean z-score -1.82
Structure conservation index 0.63
SVM decision value 0.22
SVM RNA-class probability 0.639144
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1062903 116 + 22224390
AACGUAUUGGAAACCCGAAGGCAGACCUUUAU----GCAGAAUGCUGUAAGGCAUUCAGAUAGAUUACUAACGCAAUAUUACAAUCAUUUAAAAUCCAAGCCACCAAUAAACUUCACUAU
....((((((......(((((....))))).(----((.(((((((....))))))).(.(((....))).))))............................))))))........... ( -22.10)
>DroSec_CAF1 11913 116 + 1
AACUUAUUGGAAACCCGAAGGCAUCCCUUUAU----GCAGAAUGCUGUAAGGCAUUCAGACAGAUUACUAACGCAAUAUUACAAUCAUCCAAAAUUCAAGACACCAAUGAACUUCACUAU
...(((((((......(((((....))))).(----((.(((((((....)))))))....((....))...)))............................))))))).......... ( -21.00)
>DroSim_CAF1 12861 116 + 1
AACUUAUUGGAAACCCGAAGGCAUCCCUUUAU----GCAGAAUGCUGUAAGGCAUUCAGACAGAUUACUAACGCAAUAUUACAAUCAUCCAAAAUGCAAGACACCAAUGAACUUCACUAU
...(((((((......(((((....))))).(----((((((((((....))))))).....((((................))))........)))).....))))))).......... ( -23.19)
>DroYak_CAF1 14287 113 + 1
AGUUUAUUUGAAACCCAGAGCCAGACCUUAAAGCAGGCAGAAUACUGCGAGGCAUACGGAAUUAUUGCUAUCGCAAUAUUAAAACUAUC-------CCAGCCACCAAUGAACUUCACACU
((((((((.(......................((((........))))..(((....(((..((((((....)))))).........))-------)..))).).))))))))....... ( -20.90)
>consensus
AACUUAUUGGAAACCCGAAGGCAGACCUUUAU____GCAGAAUGCUGUAAGGCAUUCAGACAGAUUACUAACGCAAUAUUACAAUCAUCCAAAAU_CAAGACACCAAUGAACUUCACUAU
...(((((((......(((((....)))))......((.(((((((....)))))))((........))...)).............................))))))).......... (-13.74 = -14.68 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:08 2006