Locus 3386

Sequence ID X_DroMel_CAF1
Location 9,043,822 – 9,043,942
Length 120
Max. P 0.709174
window5545

overview

Window 5

Location 9,043,822 – 9,043,942
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -50.80
Consensus MFE -32.20
Energy contribution -30.74
Covariance contribution -1.46
Combinations/Pair 1.51
Mean z-score -2.14
Structure conservation index 0.63
SVM decision value 0.37
SVM RNA-class probability 0.709174
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9043822 120 - 22224390
GAUGCAGAGCAGUGUGAAACAGGUGUUCCUCGGCGGCGAUCUCGCUGGAGUGGCCAACACCACGGUGGAGUCGGUCAAUGAUGGCAAGGUGGCCGCCUGGAGCAUUCAUUGUCAACUGCA
........(((((.(((....((((((((..((((((.((((.((((...(((((.((.((.....)).)).)))))....)))).)))).)))))).)))))))).....)))))))). ( -54.80)
>DroVir_CAF1 1932 120 - 1
GAUGCAGAGCAGCGUGCCACAGGUCUUCAUUGGCGGUGACUUGGCUGGUGUGGCCAACACCACCGUGGAGUCGGUCAACGAUGGCAAAGUGGCCGCCUGGAGCAUCCACUGCCAGCUGCA
..(((((.((((.((((..(((((((((((.((.((((..((((((.....)))))))))).))))))))(((.....))).(((......))))))))..))))...))))...))))) ( -52.50)
>DroGri_CAF1 1731 120 - 1
GAUGCAGAGCAGUGUGCCCCAGGUCUUCCUUGGCGGUGAUCUGGGUGGUGUGGCUAACACAACCGUUGAGUCGGUCAACGAUGGCAAAGUGGCUGCCUGGAGCAUCCACUGUCAGUUGCA
..(((((.(((((((((.((((((..(((((....((.(((..(((.((((.....)))).)))(((((.....)))))))).)).))).))..)))))).)))..))))))...))))) ( -47.10)
>DroWil_CAF1 1721 120 - 1
GCUGCAGAGUAGUGUGGCCAAUGUGUUCCUGGGUGGUGAUCUUGCCGGUGUGGCAAACACAACUGUCGAGUCGGUAAACGAUGGCAAAGUUGCAGCCUGGAGUAUACAUUGUCAAUUGAG
((..((......))..))((((((((.((..(((.(..(..(((((((((((.....))).))).....((((.....)))))))))..)..).)))..).).))))))))......... ( -42.70)
>DroAna_CAF1 2244 120 - 1
UAUGCAGAGCAGCCUGAAACAGGUUUUCCUGGGUGGAGACCUGGCGGGCGUAGCUAAUACCACAGUGGAGUCGGUCAACGACGGCAAGGUGGCCGCCUGGGGCAUUCACUGCCAGCUGCA
..((((((((.(((((...(((((((.((.....))))))))).)))))...))).......(((((((((((.....)))).((.((((....))))...)).)))))))....))))) ( -51.60)
>DroMoj_CAF1 2587 120 - 1
CAUGCAGAGCAGCGUGCCGCAGGUCUUCCUGGGCGGUGAUCUGGCCGGCGUGGCCAAUACCACCGUGGAGUCGGUCAACGAUGGCAAAGUCGCCGCCUGGAGCAUUCACUGCCAGCUGCA
..(((((.((((.(((((.((((....))))(((((((((...((((.(((((((.((.((.....)).)).)))).))).))))...)))))))))..).))))...))))...))))) ( -56.10)
>consensus
GAUGCAGAGCAGCGUGCCACAGGUCUUCCUGGGCGGUGAUCUGGCUGGUGUGGCCAACACCACCGUGGAGUCGGUCAACGAUGGCAAAGUGGCCGCCUGGAGCAUUCACUGCCAGCUGCA
........(((((........(((.((((..((((((.((...((((.(((((((.((.((.....)).)).)))).))).))))...)).)))))).)))).)))........))))). (-32.20 = -30.74 +  -1.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:07 2006