Locus 337

Sequence ID X_DroMel_CAF1
Location 1,058,732 – 1,058,824
Length 92
Max. P 0.537548
window513

overview

Window 3

Location 1,058,732 – 1,058,824
Length 92
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 70.73
Mean single sequence MFE -26.13
Consensus MFE -10.75
Energy contribution -12.35
Covariance contribution 1.60
Combinations/Pair 1.14
Mean z-score -1.72
Structure conservation index 0.41
SVM decision value 0.01
SVM RNA-class probability 0.537548
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1058732 92 + 22224390
------------------------UAGCCGGAAAACUGAGGGGCUCUUCAUUGGCAAUAACGAAUUCAAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCC
------------------------..((((((((.((((((((((....(((.(......).)))....))))).)))))...))))..((((...))))..)))).......... ( -26.20)
>DroSec_CAF1 7751 92 + 1
------------------------UAGCCGGAAAACUGAGGGGCUCUUCAUUGGCAAUAACGAACUCAAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCA
------------------------..((((((((.((((((((((.....(((.......)))......))))).)))))...))))..((((...))))..)))).......... ( -25.90)
>DroSim_CAF1 8694 92 + 1
------------------------UAGCCGGAAAACUGAGGGGCUCUUCAUUGGCAAUAACGAACUCAAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCA
------------------------..((((((((.((((((((((.....(((.......)))......))))).)))))...))))..((((...))))..)))).......... ( -25.90)
>DroEre_CAF1 7441 78 + 1
--------------------------------------NNNNNNNNNNNNCUGGCAAUAACGAACUCGAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUACCAGGCC
--------------------------------------............((((......((.(((.((((..(.....)..)))).))).))...((....)).....))))... ( -13.80)
>DroYak_CAF1 10199 92 + 1
------------------------UAGCCGGAAAACUGAGGGGCUCUUCGUUGGCGCUAACGAAUUCGAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCG
------------------------..((((((((.((((((((((((((((((....)))))))...).))))).)))))...))))..((((...))))..)))).......... ( -31.40)
>DroAna_CAF1 10014 113 + 1
CUGUCCAUCACCAGAACGUGGGUAUUACGGCGAAAUUGAGGAACUCGCCAUCCG---UUUCCAGUCAGAAGCCUCUGCAGCACUUCCAAUCGGAAACGGAAACAGCCUACCAGGCA
..(((..((....))..((((((.....(((((...........))))).((((---(((((.((..((((...........))))..)).)))))))))....))))))..))). ( -33.60)
>consensus
________________________UAGCCGGAAAACUGAGGGGCUCUUCAUUGGCAAUAACGAACUCAAAGCCCAUUCAGCACUUUCAGUCCGAAACGGAAACGGCAUAUCAGGCA
..........................(((((.....(((((....))))))))))...............(((......((..((((.....))))((....))))......))). (-10.75 = -12.35 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:05 2006