Locus 3364

Sequence ID X_DroMel_CAF1
Location 8,980,534 – 8,980,626
Length 92
Max. P 0.966335
window5511

overview

Window 1

Location 8,980,534 – 8,980,626
Length 92
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 72.54
Mean single sequence MFE -21.82
Consensus MFE -11.48
Energy contribution -11.35
Covariance contribution -0.13
Combinations/Pair 1.29
Mean z-score -2.26
Structure conservation index 0.53
SVM decision value 1.59
SVM RNA-class probability 0.966335
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8980534 92 + 22224390
-------UUGAAGAAAUACUUCAACUGUUAGGGAAAUUAAAUAUUUC---AUU-UCAGUUUAGCUGGUAGAAGACAUCUAUCUAGCUAGCUUUUGGCCUAGUU
-------((((((.....))))))...((((((((((.....)))))---...-((((.((((((((((((.....)))).))))))))...))))))))).. ( -23.10)
>DroSec_CAF1 9069 95 + 1
-------UUGAAGAAUUCCUUCAACUGUUAAAU-AUUUAUAUGUUUAUAUAUGUUUAGUUUAGCUGGUGGAAGACAUCUAUCUAGCUAGUUUUUGGCCUAGUU
-------.(((((.....)))))((((((((((-((.((((....)))).)))))))).((((((((((((.....)))).)))))))).........)))). ( -21.40)
>DroSim_CAF1 4802 94 + 1
-------UUGAAGAAUUCCUUCAACUGUUAAAU-AUUUAAAUGUUUAAAUAUC-UUAGUUUAGCGGGUGAAAGACAGCUAUCUAGCUAGUUUUUGGCCUAGUU
-------((((((.....))))))..(((((((-((((((....)))))))).-.....)))))((((.((((((((((....)))).)))))).)))).... ( -23.60)
>DroYak_CAF1 1343 97 + 1
CAUAAAUUUGGAAAAUUUUUUAAACUUUUAGGGGACUAAAAUAUUUA---UUU-UUGGUUUAGCUGGUGGUGCAACAUUAUCUAGCUAUU-UUUG-GCUAAGU
......(((((((....))))))).((((((....))))))......---..(-((((((((((((((((((...))))).)))))))..-...)-)))))). ( -19.20)
>consensus
_______UUGAAGAAUUCCUUCAACUGUUAAAG_AUUUAAAUAUUUA___AUU_UUAGUUUAGCUGGUGGAAGACAUCUAUCUAGCUAGUUUUUGGCCUAGUU
.......((((((.....))))))....................................(((((((((((.....)))).)))))))............... (-11.48 = -11.35 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:34 2006