Locus 3357

Sequence ID X_DroMel_CAF1
Location 8,972,800 – 8,972,903
Length 103
Max. P 0.858802
window5495

overview

Window 5

Location 8,972,800 – 8,972,903
Length 103
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 76.44
Mean single sequence MFE -20.46
Consensus MFE -14.03
Energy contribution -13.63
Covariance contribution -0.40
Combinations/Pair 1.19
Mean z-score -1.69
Structure conservation index 0.69
SVM decision value 0.82
SVM RNA-class probability 0.858802
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8972800 103 - 22224390
CGCAUGCU------CAUCCUCA---UCGUCCUGUCACGGCAAUCCUCCUCAUUAUCCUCAUUGCCGGCAGCGUGAAAUUUUCAAUUCGCCAUAGACGAACACAAACGUUUGU
.(((.((.------........---(((((((((..(((((((................))))))))))).(((((........)))))....)))))........)).))) ( -20.12)
>DroPse_CAF1 17874 85 - 1
CUUAUC---------------------CAUUUGCCAUGGCAAUCCCCCUCAUUAUCCUCAUUGCCAGGAGCGUGAAAUUUUCAAUUCUCCACAGGCC------AACGUUUGU
......---------------------.....(((.(((((((................)))))))((((..(((.....)))...))))...))).------......... ( -18.39)
>DroEre_CAF1 18315 106 - 1
CGCAUCCU------CAUGCUCAGCCUCGUCCUGUUACGGCAAUCCUCCUCAUUAUCCUCAUUGCCGGGAGCGUGAAAUUUUCAAUUCGCCAUAGACGAACACAAACGUUUGU
.......(------((((((((((........))).(((((((................))))))).))))))))...............(((((((........))))))) ( -23.79)
>DroYak_CAF1 18944 112 - 1
CUCAUCCUCAUUCGCAUGCUCAUCCUCGUCCUGUCACGGCAAUCCUCCUCAUUAUCCUCAUUGCCGGGAGCGUGAAAUUUUCAAUUCGCCAUAGACGAACACAAACGUUUGU
..............(((((((......(......).(((((((................))))))).)))))))................(((((((........))))))) ( -21.59)
>DroPer_CAF1 16631 85 - 1
CUUAUC---------------------CAUUUGCCAUGGCAAUCCCCCUCAUUAUCCUCAUUGCCAGGAGCGUGAAAUUUUCAAUUCUCCACAGGCC------AACGUUUGU
......---------------------.....(((.(((((((................)))))))((((..(((.....)))...))))...))).------......... ( -18.39)
>consensus
CUCAUCCU______CAU_CUCA___UCGUCCUGUCACGGCAAUCCUCCUCAUUAUCCUCAUUGCCGGGAGCGUGAAAUUUUCAAUUCGCCAUAGACGAACACAAACGUUUGU
................................((..(((((((................)))))))...))(((((........))))).(((((((........))))))) (-14.03 = -13.63 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:19 2006