Locus 3345

Sequence ID X_DroMel_CAF1
Location 8,947,354 – 8,947,470
Length 116
Max. P 0.589374
window5477

overview

Window 7

Location 8,947,354 – 8,947,470
Length 116
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 78.98
Mean single sequence MFE -42.69
Consensus MFE -29.52
Energy contribution -28.30
Covariance contribution -1.22
Combinations/Pair 1.35
Mean z-score -1.18
Structure conservation index 0.69
SVM decision value 0.11
SVM RNA-class probability 0.589374
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8947354 116 - 22224390
UAUAUGCAUAUUC---CAGGUGAACCCGAGCUGAAUGCCAGCUCCAUUGGCAUGGCCAAGGCGGCGCUGGAGGCCAUGAACGAGCUGGAUCUGUUCGGAGCCCGUGGCGGUCCGGCUAG
............(---((((....)).((((((.....))))))...)))(((((((..(((...)))...)))))))....(((((((.((((((((...))).)))))))))))).. ( -45.40)
>DroPse_CAF1 44989 113 - 1
---UUCGAUCUUU---CAGGUGAGCCGGAAUUGAAUGCCAGCUCCAUUGGCAUGGCCAAGGCCGCCUUGGAGGCCAUGAACGAGUUGGAUUUGUUUGGAGCACGCGGCGGACCAGCCAG
---..........---...(((..(((((...((((.(((((((...((((....((((((...))))))..)))).....))))))))))).)))))..)))..(((......))).. ( -41.90)
>DroGri_CAF1 12358 108 - 1
---------UUCA--UUAGGUGAACCCGAGUUGAAUGCCAGCUCCAUUGGCAUGGCUAAGGCCGCACUUGAGGCCAUGAAUGAGCUGGAUUUGUUUGGCGCACGCGGUGGACCCGCUAG
---------....--...(((..(((((.((..(((.(((((((......((((((((((......)))..)))))))...)))))))....)))..))...)).)))..)))...... ( -38.90)
>DroWil_CAF1 13577 118 - 1
AA-UUUUAUCUUUGGAUAGGUGAGCCUGAGCUGAAUGCCAGCUCCAUUGGCAUGGCAAAGGCAGCUUUGGAGGCAAUGAAUGAAUUGGAUUUAUUUGGAGCCCGUGGCGGUCCGGCCAG
..-..((((((......))))))(((.((((((.....))))))....))).((((...(((.(((...(.(((..(((((((((...)))))))))..))))..))).)))..)))). ( -38.70)
>DroMoj_CAF1 11702 107 - 1
---------GUGA---CAGGUGAGCCCGAACUGAAUGCCAGCUCCAUCGGCAUGGCUAAGGCAGCAUUAGAGGCCAUGAACGAGCUGGAUUUGUUUGGAGCACGCGGUGGACCCGCAAG
---------....---.......((((((((.((((.(((((((......(((((((..............)))))))...))))))))))))))))).))..((((.....))))... ( -40.24)
>DroAna_CAF1 10437 115 - 1
AAACUGCCU-UUC---UAGGUGAACCCGAGCUGAAUGCCAGCUCCAUUGGCAUGGCCAAGGCCGCUCUCGAGGCCAUGAACGAGCUGGAUCUGUUCGGGGCCCGCGGUGGUCCCGCCAG
.....((((-...---.))))...(((((((.((...(((((((..(((((...)))))((((........))))......))))))).)).)))))))......((((....)))).. ( -51.00)
>consensus
____U__AUCUUA___CAGGUGAACCCGAGCUGAAUGCCAGCUCCAUUGGCAUGGCCAAGGCCGCACUGGAGGCCAUGAACGAGCUGGAUUUGUUUGGAGCACGCGGCGGACCCGCCAG
...................(((..(((((((.((...(((((((......(((((((.((......))...)))))))...))))))).)).)))))).)..)))(((......))).. (-29.52 = -28.30 +  -1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:02 2006