Locus 3337

Sequence ID X_DroMel_CAF1
Location 8,926,952 – 8,927,071
Length 119
Max. P 0.626831
window5467

overview

Window 7

Location 8,926,952 – 8,927,071
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.66
Mean single sequence MFE -40.45
Consensus MFE -28.16
Energy contribution -28.47
Covariance contribution 0.31
Combinations/Pair 1.43
Mean z-score -1.19
Structure conservation index 0.70
SVM decision value 0.19
SVM RNA-class probability 0.626831
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8926952 119 + 22224390
ACGCCGACCUUGUGCCCGCCAAGCUGGCCAACACUCGAUGCCCCCAGGUGGUCAUACAGUUCUAUGAGGAGCGCCUCACCUGGCACACGGGCAGCGGCAAUGGUAAUGGGAAUACGAAU-
...((.(((...((((((((.....)))..........(((((((((((((.......(((((....)))))...)))))))).....)))))).))))..)))...))..........- ( -40.10)
>DroGri_CAF1 46243 119 + 1
AUGCCGAUCUAGUGCCAGCCAAGCUGGCCAACAUCAAGUGCCCCAAAGUCGUUAUACAAUUCUACGAAGAGCGUCUCACAUGGUACACUGGUAACGGCAAUGGCAAUGGUAAUGGUAAU-
.(((((..(((((((((((...)))))).........(((((....((.((((...(........)...)))).)).....))))))))))...)))))....................- ( -32.80)
>DroEre_CAF1 41182 113 + 1
AUGCAGACCUGGUGCCCGCCAAGCUGGCCAACAUUCGGUGUCCCCAGGUGGUCAUCCAGUUCUAUGAGGAGCGCCUCACCUGGCACACGGGCAGCGG------CAAUGGGAAUAGCAAU-
.(.((...(((.((((((((.....))).........((((..((((((((.......(((((....)))))...)))))))).))))))))).)))------...)).).........- ( -40.00)
>DroWil_CAF1 54774 120 + 1
AUGCCGAUUUAGUGCCUGCCAAACUGGCUAAUAUUAAAUGCCCUCAGCUUGUCAUUCAGUUCUAUGAAGAGCGUCUCACCUGGCACACUGGCAAUGGCAACGGCAAUGGUAAUUCAAGUG
.(((((......((((.(((.....)))..........((((....((((.((((........)))).))))(((......))).....))))..)))).)))))............... ( -33.00)
>DroYak_CAF1 41947 119 + 1
ACGCUGACCUGGUGCCCGCCAAGCUGGCCAACAUACGCUGUCCCCAGGUGGUCAUACAGUUCUAUGAGGAGCGUCUCACCUGGCACACGGGCAGCGGCAACGGCAAUGGGAAUAGCAAU-
..((((.(((..((((.(((.....))).......((((((((((((((((....((.(((((....))))))).)))))))).....)))))))).....))))..)))..))))...- ( -48.50)
>DroAna_CAF1 35040 112 + 1
ACGCUGAUCUGGUGCCGGCCAAGCUGGCCAACAUCCGCUGUCCCCAGGUGGUGAUCCAAUUCUACGAGGAGCGCCUUACUUGGCACACCGGCAGCGGGAACGGCAACGGAAA--------
.......((((.((((((((.....))))....(((((((((.((((((((((.(((..........))).))))..))))))......)))))))))...)))).))))..-------- ( -48.30)
>consensus
ACGCCGACCUGGUGCCCGCCAAGCUGGCCAACAUUCGAUGCCCCCAGGUGGUCAUACAGUUCUAUGAGGAGCGCCUCACCUGGCACACGGGCAGCGGCAACGGCAAUGGGAAUAGCAAU_
..((((..(((.((((((((.....)))...............((((((((.......(((((....)))))...)))))))).....))))).)))...))))................ (-28.16 = -28.47 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:52 2006