Locus 3298

Sequence ID X_DroMel_CAF1
Location 8,791,137 – 8,791,248
Length 111
Max. P 0.892074
window5398

overview

Window 8

Location 8,791,137 – 8,791,248
Length 111
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 71.71
Mean single sequence MFE -34.73
Consensus MFE -19.45
Energy contribution -21.39
Covariance contribution 1.94
Combinations/Pair 1.19
Mean z-score -1.88
Structure conservation index 0.56
SVM decision value 0.97
SVM RNA-class probability 0.892074
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8791137 111 - 22224390
ACUUUAUAUUUACCUUGAGCCCGGUCGGGA--GUGCCUGGCAACUUUUGGCAACACGGCUGGGGAAUUUGCGUGCCUUGAAAGCGCCACGA-AAAUACCCCAAUUGGU---UAGAGG
............((((.((((.(((((...--.((((.(....)....))))...)))))((((.((((.(((((((....)).).)))).-)))).))))....)))---).)))) ( -37.00)
>DroSec_CAF1 39392 91 - 1
ACUUUUUAUUUACCUUGAGACCGGGUGAGA--GUGCCUGGCAACUUUUGGCAACUCGGCUGGGGAA-----------------------GA-AAUAGCCCCAGUUGGGUGGUAGAGG
........((((((....(.((((((....--..)))))))...........((((((((((((.(-----------------------..-..)..)))))))))))))))))).. ( -35.20)
>DroSim_CAF1 32366 88 - 1
ACUUUUUAUUUACCUUGAGACCGGGUGAGA--GUGCCUGGCAACUUUUGGCAACUCGGCUGGGGAA-----------------------GA-AAUAGCCCCAGUUGGG---UAGAGG
.((((.......((..(((.((((((....--..))))))...)))..))..((((((((((((.(-----------------------..-..)..)))))))))))---))))). ( -33.40)
>DroEre_CAF1 35044 110 - 1
ACUUUUUAUUUACCUUAA-GCCGGGAGAGAGUGUGCCUGGCAAU-UUUGGCAACCCAGCUGUGAAGUUUGCAUGCCUUGGAAGCCCCACGAAAGUAGC-CCGGUUGG----UAGAGG
........((((((...(-((((((......((((...(((..(-(..((((..(.((((....)))).)..))))..))..))).)))).......)-))))))))----)))).. ( -33.32)
>consensus
ACUUUUUAUUUACCUUGAGACCGGGUGAGA__GUGCCUGGCAACUUUUGGCAACUCGGCUGGGGAA_______________________GA_AAUAGCCCCAGUUGGG___UAGAGG
.((((.......((..(((.(((((((......)))))))...)))..))...(((((((((((.................................)))))))))))....)))). (-19.45 = -21.39 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:51 2006