Locus 3278

Sequence ID X_DroMel_CAF1
Location 8,717,087 – 8,717,193
Length 106
Max. P 0.996409
window5372

overview

Window 2

Location 8,717,087 – 8,717,193
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 87.93
Mean single sequence MFE -31.72
Consensus MFE -26.49
Energy contribution -27.56
Covariance contribution 1.07
Combinations/Pair 1.06
Mean z-score -2.65
Structure conservation index 0.84
SVM decision value 2.69
SVM RNA-class probability 0.996409
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8717087 106 - 22224390
CGGUUUUCACUUUUGGUCAGGGCUGCUCUGAUUCCAAGAGCAAGAACCACACUUAAUGGCUAAGUUCCGGAUCCUACUCAAUAGGGAUUAACUGCCGCCAGACCAA
.((((((..(((((((((((((...))))))..)))))))..))))))........((((..((((...((((((........))))))))))...))))...... ( -34.00)
>DroSec_CAF1 152143 105 - 1
CGGUUUUCACUUUUGGUCAGGGGUGCUCCUAUUCCAAGAGCAAGAACCACACUUAAUGGCUAAGUU-CGGAUCCUUCUCAAUAGGGAUUAACUGCGGCCAGACCAA
.((((((..(((((((..((((....))))...)))))))..))))))........(((((.((((-..(((((((......)))))))))))..)))))...... ( -35.50)
>DroSim_CAF1 117379 105 - 1
CGGUUUUCACUUUUGGUCAGGGGUGCUCCUAUUCCAAGAGCAAGAACCACACUUAAUGGCUAAGUU-CGGAUCCUUCUCAAUAGGGAUUAACUGCCGCCAGACCAA
.((((((..(((((((..((((....))))...)))))))..))))))........((((..((((-..(((((((......)))))))))))...))))...... ( -33.60)
>DroEre_CAF1 166549 87 - 1
CGGUUUUAACUUUUGGUCA----------------AAGAGCAAGAACC--ACUUAAUGGCUAAGUU-CUGAUCCUUCUCAAUAGGGAUUAACUGCCGCCAGACCAA
.((((((..(((((.....----------------)))))..))))))--......((((..(((.-.((((((((......)))))))))))...))))...... ( -23.50)
>DroYak_CAF1 159963 102 - 1
CGGUUUUCACUUUUGGUCAGGGGUGCUCCUAUUCCAAGAGCAAGAACC--ACUUAAUGGCUAGGU--CCGAUCCUUCUCAAUACGGAUUCACUGCAGCCAGACCAA
.((((((..(((((((..((((....))))...)))))))..))))))--......(((((.(((--..(((((..........))))).)))..)))))...... ( -32.00)
>consensus
CGGUUUUCACUUUUGGUCAGGGGUGCUCCUAUUCCAAGAGCAAGAACCACACUUAAUGGCUAAGUU_CGGAUCCUUCUCAAUAGGGAUUAACUGCCGCCAGACCAA
.((((((..(((((((..((((....))))...)))))))..))))))........((((..((((...((((((........))))))))))...))))...... (-26.49 = -27.56 +   1.07)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:28 2006