Locus 3276

Sequence ID X_DroMel_CAF1
Location 8,710,455 – 8,710,560
Length 105
Max. P 0.629206
window5369

overview

Window 9

Location 8,710,455 – 8,710,560
Length 105
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 80.63
Mean single sequence MFE -24.26
Consensus MFE -13.35
Energy contribution -13.85
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.55
SVM decision value 0.20
SVM RNA-class probability 0.629206
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8710455 105 + 22224390
CAGACCCUCCUCAGACAGAUACAAUCCGGCAUAACAAAAGAUCUCU-UUGCAAAUUGUUUAUUUGCUGCUUGGGUGAUCAGCAAACGGAUUGUU-UAUGCUAAUAUC------
............((.((...(((((((((((.....((((....))-))......)))...(((((((.((....)).))))))))))))))).-..))))......------ ( -23.70)
>DroPse_CAF1 171608 91 + 1
CAAAAAC---UCA-------------UCGCAUAACAAAAGAUCUGUUUUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUUUUAUGCAAAUAUC------
.......---...-------------..((((((.(...(((((((((.((((((.....))))))......(((....)))))))))))).).)))))).......------ ( -22.40)
>DroEre_CAF1 160080 102 + 1
CAGAGCC---UCAGACAGACACAAUCCGGCAUAACAAAAGAUCUCU-UUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUU-UAUGCUAAUACC------
.......---..((.((...(((((((((((.....((((....))-))((((((.....)))))))))...(((....)))...)))))))).-..))))......------ ( -24.40)
>DroYak_CAF1 153233 102 + 1
CAGACCC---UCAGACAGACACAAUCCGGCAUAACAAAAGAUCUCU-UUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUU-UAUGCUAAUAUC------
.......---..((.((...(((((((((((.....((((....))-))((((((.....)))))))))...(((....)))...)))))))).-..))))......------ ( -24.40)
>DroAna_CAF1 135183 108 + 1
AAGGGAA---AAAACCUGAGACGGUCCGGCACAACAAAAGAUCUCU-UUGCAAAUUGUUUAUUUGCUGCUCCGCUGAUCACCAAACGGAUUGUU-UAUGCUAAUGUCCCUACC
.(((((.---........(((((((((((((.....((((....))-))((((((.....))))))))).....((.....))..)))))))))-).........)))))... ( -28.27)
>DroPer_CAF1 158923 91 + 1
CAAAAAC---UCA-------------UCGCAUAACAAAAGAUCUGUUUUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUUUUAUGCAAAUAUC------
.......---...-------------..((((((.(...(((((((((.((((((.....))))))......(((....)))))))))))).).)))))).......------ ( -22.40)
>consensus
CAGAAAC___UCAGACAGA_ACAAUCCGGCAUAACAAAAGAUCUCU_UUGCAAAUUGUUUAUUUGCUGCUUGGCUGAUCAGCAAACGGAUUGUU_UAUGCUAAUAUC______
............................(((((......(((((.....((((((.....))))))......(((....)))....)))))....)))))............. (-13.35 = -13.85 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:25 2006