| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,668,091 – 8,668,203 |
| Length | 112 |
| Max. P | 0.500000 |
| Location | 8,668,091 – 8,668,203 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.99 |
| Mean single sequence MFE | -19.46 |
| Consensus MFE | -8.22 |
| Energy contribution | -8.42 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.42 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8668091 112 - 22224390 CCAGAAGGAUAAUUCCUUUUGGCCAAAGCCCAGCGGCAAAUACACUAUUC--GAAAAAUAAAAAUGCGAAAC---AUC---ACACUUUUUAUAAGGCAAAAUAUUUAAAUGCUGUUAAAA .((((((((....))))))))(((...(((....))).............--.....(((((((((.((...---.))---.)).)))))))..)))....................... ( -22.80) >DroSec_CAF1 104785 106 - 1 CCAGAAGGAUAAUUCCGUUUGGCCAAAACCCAGCGGCAAAUACACUAUUC--GAAAA------AAGCAAAAC---AUC---GUAUUUUUUAUGAGAUAAAAUAAUGAAAUGAUGUUAAAA .((((.(((....))).))))(((..........))).............--.....------......(((---(((---((.(((.((((........)))).))))))))))).... ( -17.80) >DroSim_CAF1 69169 106 - 1 CCAGAAGGAUAAUUCCGUUUGGCCAAAACCCAGCGGCAAAUACACUAUUC--GAAAA------AAGCAAAAC---AUC---GCAUUUUUUAUGAGAUAAAAUAUAGAAAAAAUGUUAAAA .((((.(((....))).))))(((..........)))..........(((--(((((------((((.....---...---)).)))))).))))......................... ( -13.70) >DroEre_CAF1 116524 91 - 1 CCAGAAGGAUAAUUC-UUUUGGCCGAAGCCCAGCGGCAGAUACACUACUAAAAAAA-------AGGCGAAAC---AAC---GCAUUUUUU------------AAA---GUAAUGUGAGAA .((((((((...)))-)))))((((........))))...((((.((((..(((((-------(.(((....---..)---)).))))))------------..)---))).)))).... ( -23.60) >DroYak_CAF1 108228 97 - 1 CCAGAAGGAUAAUUCCGUUUGGCCAAAGCCCAGCGGCAGAUACACUAUGC--GAAA-------AGGCGAAGACCUUAGGCAGCAGU--AU------------AAAUACAUAAUGUAGAAA (((((.(((....))).))))).....(((....)))..((((....(((--...(-------(((......))))..)))...))--))------------...(((.....))).... ( -19.40) >consensus CCAGAAGGAUAAUUCCGUUUGGCCAAAGCCCAGCGGCAAAUACACUAUUC__GAAAA______AAGCGAAAC___AUC___GCAUUUUUUAU_AG__AAAAUAAAGAAAUAAUGUUAAAA .((((.(((....))).))))(((..........)))................................................................................... ( -8.22 = -8.42 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:12 2006