| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,643,767 – 8,643,865 |
| Length | 98 |
| Max. P | 0.585125 |
| Location | 8,643,767 – 8,643,865 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 89.06 |
| Mean single sequence MFE | -29.15 |
| Consensus MFE | -24.64 |
| Energy contribution | -25.50 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8643767 98 + 22224390 UG-GUGGAAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGCAGCAGCUGAGGACACGCACCCAAAAAAAUAAAAAGGGGCGGC--GAUGGGU ..-((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((.............)))))...--))))))) ( -29.82) >DroSec_CAF1 81101 93 + 1 UG-GUGGAAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCCAAAA-----AAAAGGGGCGGC--GAUGGGU ..-((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((....-----....)))))...--))))))) ( -31.00) >DroSim_CAF1 44703 94 + 1 UG-GUGGAAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCCAAAAA----AAAAGGGGCGGC--GAUGGGU ..-((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((.....----....)))))...--))))))) ( -30.20) >DroEre_CAF1 92993 91 + 1 UG-GUGGGAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCCAAA-------AAAGGGGCGGA--GAUGGGU ..-((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((...-------...)))))...--))))))) ( -30.70) >DroYak_CAF1 83423 91 + 1 UGGGUGGCAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCGGGAGCAGCUGAGGACACGCACCCAAA--------AAGGGGCGGA--GAUGGGU ..........((((.....))))...(((((((.(((..(((((..(....)..)))).)..)))((.(((...--------..)))))...--))))))) ( -29.70) >DroAna_CAF1 70793 94 + 1 CG-GGAGGAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCAGAAG------CGAGGGGAGGAGCGGGCGGA ..-.......(((..(((((..(...((((....(((..(((((..........)))).)..))).......)))------)...)..)))))..)))... ( -23.50) >consensus UG_GUGGAAAGUCAACUUUUGACAAGGCUUAUCAGUGGACCAGCAUCAGGAGCAGCUGAGGACACGCACCCAAAA______AAAGGGGCGGA__GAUGGGU ...((.(((((....))))).))...(((((((.(((..(((((..........)))).)..)))((.(((.............))))).....))))))) (-24.64 = -25.50 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:02 2006