Locus 3251

Sequence ID X_DroMel_CAF1
Location 8,611,609 – 8,611,708
Length 99
Max. P 0.541661
window5334

overview

Window 4

Location 8,611,609 – 8,611,708
Length 99
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 96.97
Mean single sequence MFE -20.38
Consensus MFE -19.62
Energy contribution -18.75
Covariance contribution -0.88
Combinations/Pair 1.19
Mean z-score -1.48
Structure conservation index 0.96
SVM decision value 0.02
SVM RNA-class probability 0.541661
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8611609 99 - 22224390
CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUAGAGCUACAAAUUUUCCGUACCCUCCCUCAGUGGGUUUCCCAUUGUUU
...((((...((((...((((((.....)).))))........))))....))))........................(((((((...)))))))... ( -18.10)
>DroSec_CAF1 49589 99 - 1
CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUAGAGCUACAAAUUUUCCGUACCCUCCUUCGGCGGGCUUCCCAUUGUUU
..........(((.(((((((((.....)).))).........(((.(((..(((........)))..))).))).....)))))))............ ( -20.70)
>DroSim_CAF1 20376 99 - 1
CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUAGAGCUACAAAUUUUCCGUACCCUCCUUCGGCGGGCUUCCCAUUGUUU
..........(((.(((((((((.....)).))).........(((.(((..(((........)))..))).))).....)))))))............ ( -20.70)
>DroEre_CAF1 62539 99 - 1
CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUGGAGCUACAAAUUUUCCGUACCCUCCCUCAGCGGGUUUCCCAUUGUUU
..........(((.(((((((((.....)).))).........(((.(((.((((.........))))))).))).....)))))))............ ( -22.00)
>consensus
CUUUUCUUUCGCCUCGCUGCGGCACCUUGCUCGCAUUUUCAUCAGGUUACUAGAGCUACAAAUUUUCCGUACCCUCCCUCAGCGGGCUUCCCAUUGUUU
..........(((.(((((((((.....)).))).........(((.(((.(((........)))...))).))).....)))))))............ (-19.62 = -18.75 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:53 2006