Locus 3247

Sequence ID X_DroMel_CAF1
Location 8,594,108 – 8,594,223
Length 115
Max. P 0.500000
window5330

overview

Window 0

Location 8,594,108 – 8,594,223
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 70.17
Mean single sequence MFE -28.78
Consensus MFE -5.75
Energy contribution -8.97
Covariance contribution 3.22
Combinations/Pair 1.23
Mean z-score -1.68
Structure conservation index 0.20
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8594108 115 + 22224390
CUCAGCAGCUUCCAUUCAAAUGCAUCUCGGUAUUUGG----CCA-UUGUUUUCACUAAAUAGAGACUUAAUGGGAUUUAUUUAUCAAUAAAUUAUGGAAAUUUAAGGGGCUGGCUGGGAC
((((((((((((...((((((((......))))))))----(((-(.((((....((((((((..((....))..)))))))).....)))).))))........)))))).)))))).. ( -34.30)
>DroSec_CAF1 34327 115 + 1
CUGAGCAGCUUCCAUUCAAAAGCAUCUCGGUAUUUGG----CCA-UUGUUUUCCCUAAAUAGAGACUUAAUGGGAUUUAUUUAUCAAUAAAUUAUGGAAAUUUUAGGGGCUGGCUGGGAC
((.(((((((((...(((((.((......)).)))))----(((-(.((((....((((((((..((....))..)))))))).....)))).))))........)))))).))).)).. ( -27.30)
>DroEre_CAF1 45195 115 + 1
CAGAGCAGCUGGCAUGGCAAAGCUGCUCGGUAGUUGG----CCA-UUGUUUUCCCUAAAUAGAGGCUUAAUCGGAUGUAUUUAUAAAUUAAUUAUGGAAAUUUAAAGGGCUGGCUGGGAC
..((((((((.((...))..))))))))..((((..(----((.-....(((((.((((((((.((..........)).))))).......))).))))).......)))..)))).... ( -32.01)
>DroYak_CAF1 34744 119 + 1
CCAAGCAGCUUACAUUCAAAAGCCUUUCGGUAUUUGGCUCGCCA-UUGUUCUGCCUAAAUAGACACUUAAUGGGAUUUAUUUAUCAAUAAAUUAUGGAAAUUUAAAGUGCUGCCUUCGAC
....(((((.......((((.(((....))).))))(((..(((-(((.((((......))))....))))))((((((((....))))))))............))))))))....... ( -23.00)
>DroAna_CAF1 25464 91 + 1
CGGA-CAGUUUACAUGCGACAGCCCUUGGCUGUCUGC----UAAGUAGUGCUCCUUAAA----CGCUUAAACCCAUU----UCACA----------GCAGCUUUAAAGGCUGCC------
.(((-((..((((..(((((((((...))))))).))----...)))))).))).....----..............----.....----------((((((.....)))))).------ ( -27.30)
>consensus
CUGAGCAGCUUACAUUCAAAAGCAUCUCGGUAUUUGG____CCA_UUGUUUUCCCUAAAUAGAGACUUAAUGGGAUUUAUUUAUCAAUAAAUUAUGGAAAUUUAAAGGGCUGGCUGGGAC
.....((((((....(((((.(((....))).)))))....(((...........((((((((..(......)..))))))))...........))).........))))))........ ( -5.75 =  -8.97 +   3.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:49 2006