| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,588,139 – 8,588,252 |
| Length | 113 |
| Max. P | 0.749134 |
| Location | 8,588,139 – 8,588,252 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.26 |
| Mean single sequence MFE | -18.33 |
| Consensus MFE | -13.85 |
| Energy contribution | -14.80 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8588139 113 - 22224390 UGAAGCGGAAGAGCAUCAUCAUAGCGGUAAUCAUGUUACCUCAAUUCGAAAUGAAUUCAUAACUGAAUUUUCGCAUUUUCCAC----CAC-ACCACCACACUUACCCAAAA-ACU-AAGC ......((((((((.........(.((((((...)))))).).....((...(((((((....))))))))))).))))))..----...-....................-...-.... ( -18.00) >DroVir_CAF1 26926 106 - 1 UGAAGCGGAAGAGCAUCAUCAUAGCGGUAAUCAUGUUACCUCAAUUCGAAAUGAAUUCAUAACUGAAUUUUCGCAUUUUCCACC------------CCAAAU--ACCCAACUAACAAGCC ......((((((((.........(.((((((...)))))).).....((...(((((((....))))))))))).))))))...------------......--................ ( -18.00) >DroPse_CAF1 52989 103 - 1 UGAAGCGGAAGAGCAUCAUCAUAGCGGUAAUCAUGUUACCUCAAUUCGAAAUGAAUUCAUAACUGAAUUUUCGCAUUUUCCUCA------------CACUCA--GCCGCAC-ACA--AAC ....((((..(((..........(.((((((...)))))).)(((.(((...(((((((....)))))))))).))).......------------..))).--.))))..-...--... ( -21.00) >DroSec_CAF1 29114 116 - 1 UGAAGCGGAAGAGCAUCAUCAUAGCGGUAAUCAUGUUACCUCAAUUCGAAAUGAAUUCAUAACUGAAUUUUCGCAUUUUCCACCCACCACAACCACCACACU--CCCCAAA-ACU-UAGC ......((((((((.........(.((((((...)))))).).....((...(((((((....))))))))))).)))))).....................--.......-...-.... ( -18.00) >DroWil_CAF1 37980 108 - 1 UGAAGCGGAAGAGCAUCAUCAUAGCGGUAAUCAUGUUACCUCAAUUCGAAAUGAAUUCAUAACUGAAUUUUCCCUCCCCCCUAG--CUAUAUAGCCCACCAU--CCCAAAA-A------- (((.((......)).)))..(((((((((((...)))))).......((...(((((((....)))))))....)).......)--))))............--.......-.------- ( -17.30) >DroAna_CAF1 20610 95 - 1 UGAAGCGGAAGAGCAUCAUCAUAGCGGUAAUCAUGUUACCUCAAUUCGAAAUGAAUUCAUAACUGAAUU-UCGCAUC-CCCACC------------AGCCCA--UC--------C-UGGC (((.((......)).))).....((((((((...))))))............(((((((....))))))-).))...-....((------------((....--..--------)-))). ( -17.70) >consensus UGAAGCGGAAGAGCAUCAUCAUAGCGGUAAUCAUGUUACCUCAAUUCGAAAUGAAUUCAUAACUGAAUUUUCGCAUUUUCCACC____________CACACU__CCCAAAA_ACC__AGC ......((((((((.........(.((((((...)))))).).....((...(((((((....))))))))))).))))))....................................... (-13.85 = -14.80 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:45 2006