Locus 3226

Sequence ID X_DroMel_CAF1
Location 8,542,287 – 8,542,398
Length 111
Max. P 0.988221
window5294

overview

Window 4

Location 8,542,287 – 8,542,398
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.46
Mean single sequence MFE -18.96
Consensus MFE -18.40
Energy contribution -18.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.97
SVM decision value 2.11
SVM RNA-class probability 0.988221
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8542287 111 - 22224390
UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACU--------GAAUAAAACCACCCAAAAUCCUGUCGAA-ACCA
(((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))..--------............................-.... ( -18.40)
>DroSec_CAF1 6488 111 - 1
UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACU--------GAAUAAAACCACCCAAAAUCCUGUCGAA-ACCA
(((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))..--------............................-.... ( -18.40)
>DroSim_CAF1 9055 111 - 1
UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACU--------GAAUAAAACCACCCAAAAUCCUGUCGAA-ACCA
(((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))..--------............................-.... ( -18.40)
>DroEre_CAF1 6502 120 - 1
UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACCGAACAACAGAAUAAAACCACCCAAAAUCCAGUCGAAAACCA
(((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))........................................... ( -18.40)
>DroYak_CAF1 7630 120 - 1
UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACCGAACAACGGAAUAAAACCACCCAAAAUCCUGUCGAAAACCA
(((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))(((.....)))................................ ( -21.20)
>consensus
UUGCUUUUUUCGCCAGCAUUGACAAAUCAUAAUUAAAAAUUCCAAUUAACUAGCGUCUUUGGCGGCGAAGAAACCAACU________GAAUAAAACCACCCAAAAUCCUGUCGAA_ACCA
(((.((((((((((.((...(((......(((((.........)))))......)))....)))))))))))).)))........................................... (-18.40 = -18.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:16 2006