Locus 3210

Sequence ID X_DroMel_CAF1
Location 8,491,246 – 8,491,336
Length 90
Max. P 0.779038
window5264

overview

Window 4

Location 8,491,246 – 8,491,336
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 89.18
Mean single sequence MFE -27.00
Consensus MFE -20.23
Energy contribution -19.47
Covariance contribution -0.77
Combinations/Pair 1.19
Mean z-score -2.70
Structure conservation index 0.75
SVM decision value 0.55
SVM RNA-class probability 0.779038
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8491246 90 + 22224390
UGGCUUUCUUUUGCAAUCAGCAAUUGGAAUCGGUAGUGUAUCGCUUUGGAAAACCAUCUUAGGAUGCACAAAUCGCAUUAGUAAGCCCAA
.(((((.((..(((........((((....)))).(((((((.((.(((....)))....))))))))).....)))..)).)))))... ( -25.40)
>DroSec_CAF1 33378 88 + 1
GGGCUUUCUUCCG--AUCAGCAAUUGAACUCGGUAGUGCAUCACUUUGGAAAAGCAUCUUAGGAUGCACAAACCGCAUUAGUAAGCCCAA
((((((.((.(((--(((((...))))..))))..(((((((.((..(((......))).)))))))))..........)).)))))).. ( -28.30)
>DroSim_CAF1 42485 88 + 1
AAGCUUUCUUCUG--AUCAGCAAUUGGACUCGGUAGUGCAUCACUUUGGAAAAGCAUCUUGGGAUGCACAAACCGCAUUAGUGAGCCCAA
..(((.((....)--)..)))..((((.((((.((((((.((......))...(((((....))))).......)))))).)))).)))) ( -27.30)
>consensus
AGGCUUUCUUCUG__AUCAGCAAUUGGACUCGGUAGUGCAUCACUUUGGAAAAGCAUCUUAGGAUGCACAAACCGCAUUAGUAAGCCCAA
.(((((.((.......((((...))))...((((.(((((((.((..(((......))).)))))))))..))))....)).)))))... (-20.23 = -19.47 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:49 2006