| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,490,573 – 8,490,678 |
| Length | 105 |
| Max. P | 0.532018 |
| Location | 8,490,573 – 8,490,678 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.20 |
| Mean single sequence MFE | -18.91 |
| Consensus MFE | -12.29 |
| Energy contribution | -12.07 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8490573 105 - 22224390 CAGCGAACCAAAACACUUGGAUGUGCGGGCUUAUAAAGGGUUCAGUACCCCCCAUCCCCCCCCAUCUCUCCAUUACAGCACUCUAGAAAAUCUCUAAAAACCCCC ..((...((((.....))))..(((.(((........((((.....))))........))).)))............))....((((.....))))......... ( -16.89) >DroSec_CAF1 32781 93 - 1 CAGCGAACCAAAACACUUGGAUGUGCGGGCUUAUAAAGGGUUCAGUACC--CAAUCCCCCCCCACG----------CACACUCUAGGAAACCUCUAAAAACCCGC ...............((((((((((((((........((((.....)))--).........)).))----------)))).)))))).................. ( -22.53) >DroSim_CAF1 41905 83 - 1 CAGCGAACCAAAACACUUGGAUGUGCGGGCUUAUAAAGGGUUCAGUACC------------CCACA----------CACACUCUAGGAAACCUCUAAAAACCCGC .......((((.....))))....(((((........((((.....)))------------)....----------.........(....).........))))) ( -17.30) >consensus CAGCGAACCAAAACACUUGGAUGUGCGGGCUUAUAAAGGGUUCAGUACC__C_AUCCCCCCCCACA__________CACACUCUAGGAAACCUCUAAAAACCCGC ..(((..((((.....))))...)))(((.........(((.....)))..................................((((.....))))....))).. (-12.29 = -12.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:49 2006